Job Description P31437 Confidence 5.42% Date Thu Jan 5 11:47:28 GMT 2012 Rank 29 Aligned Residues 233 % Identity 12% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	L	N	V	L	I	A	A	V	L	W	G	S	S	G	V	C	A	Q	Y	I	M	E	Q	S	Q	M	S	S	Q	F	L	T	M	T	R	L	I	F	A	G	L	I	L	L	T	L	S	F	V	H	G	D	K	I	F	S	I	I	N	N	H	K	D	A	I	S	L	L	I	F	S	V	V	G	A	L	T	V
Query Conservation
Alig confidence															.	.	.	.	.
Template Conservation															.	.	.	.	.
Template Sequence		T	F	V	Y	A	P	F	A	H	W	L	W	G	.	.	.	.	.	G	G	W	L	A	K	L	G	A	L	D	F	A	G	G	M	V	V	H	I	S	S	G	F	A	A	L	A	V	A	M	T	I	G	K	R	A	G	F	E	E	Y	S	I	E	P	H	S	I	P	L	T	L	I	G	A	A	L	L	W	F	G
Template Known Secondary structure				T										S	.	.	.	.	.	S						T	T				S	S		T	T	T	T																			T	T	T	T	T	S					S
Template Predicted Secondary structure															.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		87	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		Q	L	T	F	L	.	.	L	T	I	E	K	S	N	A	A	T	A	T	V	L	Q	F	L	S	P	T	I	I	V	A	W	F	S	L	V	R	K	S	R	P	G	I	L	V	F	C	A	I	L	T	S	L	V	G	T	F	L	L	V	T	H	G	N	P	T	S	L	S	I	S	P	A	A	L	F	W	G	I	A
Query Conservation							.	.
Alig confidence							.	.
Template Conservation
Template Sequence		W	F	G	F	N	G	G	S	A	L	A	A	N	D	V	A	I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	G	K	P	G	S	L	G	I	V	S	G	A	I	A	G	L	A	A	I	T	P	A	A	G	F	V	D	V	K	G	A	I	V	I	G	L	V	A	G
Template Known Secondary structure								G	G	G	S	S	S	S																													S																			T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.					.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		S	A	F	A	A	A	F	Y	T	T	Y	P	S	T	L	I	A	R	Y	G	T	L	P	V	V	G	W	S	M	L	I	G	G	L	I	L	L	P	F	Y	A	R	Q	.	.	.	.	G	T	N	F	V	V	N	G	S	L	I	L	A	F	F	Y	L	V	V	I	G	T	S	L	T	F	S	L	Y	L	K	G	A
Query Conservation																																													.	.	.	.
Alig confidence																																													.	.	.	.
Template Conservation
Template Sequence		I	V	C	Y	L	A	M	D	F	R	I	K	K	K	I	D	E	S	L	D	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A	G	L	L	F	G	N	P	Q	L	L	V	S	Q	L	I	A	V	A	S	T	T	A	Y	A	F	L	V	T	L	I	L	A
Template Known Secondary structure														T	T				T	T																											S				G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		241	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	V	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions