 |
Job Description | P76541 | Confidence | 4.55% | Date | Thu Jan 5 12:24:13 GMT 2012 |
Rank | 62 | Aligned Residues | 99 |
% Identity | 11% | Template | d3bofa2 |
SCOP info | TIM beta/alpha-barrel
| Homocysteine S-methyltransferase
| Homocysteine S-methyltransferase
|
Resolution | 1.70 |
|
 |
  |   |
54 | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | A | T | K | Q | A | M | V | E | V | V | Y | G | R | S | L | Y | A | G | A | A | H | G | P | S | P | T | A | G | E | V | L | I | M | L | G | G | P | N | P | A | E | V | R | A | G | L | D | A | M | I | A | H | I | E | N | G | A | A | F | Q | W | A | N | D | A | Q | D | T | A | F | L | A | H | V | V | S | R | T | G |
Query Conservation |   |
  |   |   |
|   |   |   |
|
|   |
|   |   |
|   |
|
|   |
|   |   |   |   |   |
|   |   |
|   |
|   |   |
|
|
|   |   |   |
|
|
|
|
|
|   |
|
|
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|
|
|   |
|   |   |
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |
| . | . | . |   |   |
|   |   |   |
Template Sequence |   |
E | I | M | V | E | E | G | V | D | G | I | I | F | E | T | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | D | I | L | E | L | K | A | A | V | L | A | A | R | E | V | S | R | D | V | F | L | I | A | H | M | T | F | D | E | K | G | R | S | . |
. |
. |
L | T | G | T | D | P |
Template Known Secondary structure |   |
 |  |  |  |  | T | T |
| S |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S | S |
|  |  |  |  |  |
|
|
| T | T | S |
|
| . | . | . | T | T |
|
|
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . |
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
133 | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | |
|
|
. | . | . | . | . | . |
  |
  |   |
134 | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | |
. | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | Y | L | S | S | T | A | G | I | T | L | G | D | P | M | A | Y | L | V | A | . |
P | P | L | E | A | T | Y | G | I | D | A | A | L | K | S | A | D | V | Q | L | A | T | Y |
Query Conservation |   |
  |
|
|   |
|   |   |
|   |   |   |
|   |
|
|
|
|
|   |   | . |   |
|   |   |
|   |
|
|   |
|   |
|
|
|
|
|   |
|   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |
|
|
Template Sequence |   |
A | N | F | A | I | T | F | D | E | L | D | I | D | A | L | G | I | N | C | S | L | G | P | E | E | I | L | P | I | F | Q | E | L | S | Q | Y | T | D | K | F | L | V | V | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | T | S | S |
| S |  |  |  |  |  | S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| S |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
189 | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|