 |
Job Description | P76541 | Confidence | 15.51% | Date | Thu Jan 5 12:24:13 GMT 2012 |
Rank | 23 | Aligned Residues | 34 |
% Identity | 24% | Template | c2hh2A_ |
PDB info |
PDB header:rna binding protein | Chain: A: PDB Molecule:kh-type splicing regulatory protein; |
PDBTitle: solution structure of the fourth kh domain of ksrp
|
Resolution | UNK |
|
  |   |
169 | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | D | V | Q | L | A | T | Y | V | P | P | P | S | E | T | N | Y | S | A | A | F | L | T | G | S | Q | A | A | C | K | A | A | C | N |
Query Conservation |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |   |   |
|   |   |
|   |   |
Template Sequence |   |
A | F | V | E | I | S | R | Q | L | P | P | N | G | D | P | N | F | K | L | F | I | I | R | G | S | P | Q | Q | I | D | H | A | K | Q |
Template Known Secondary structure |   |
S |  |  |  |  |
|
|
|
|
| T | T |
|
| T | T |  |  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
38 | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|