Job Description P39199 Confidence 81.99% Date Thu Jan 5 11:58:28 GMT 2012 Rank 369 Aligned Residues 66 % Identity 21% Template c3trkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nonstructural polyprotein; PDBTitle: structure of the chikungunya virus nsp2 protease Resolution 2.40 Å

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		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		G	L	I	H	N	V	I	P	I	R	S	D	L	F	R	D	L	P	K	V	Q	Y	D	L	I	V	T	N	P	P	Y	V	D	A	E	D	M	S	D	L	P	N	E	Y	R	.	H	E	P	E	L	G	L	A	S	G	T	D	G	L	K	L	T	R	R	I	L	G	N	A	A	D	Y	L	A	D	D	G	V	L
Query Conservation																																															.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.							.							.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Sequence		G	V	R	G	A	D	Y	T	Y	N	L	E	L	G	L	P	A	T	L	G	R	Y	D	L	V	V	I	N	.	.	.	.	.	.	.	.	.	.	.	I	H	T	P	F	R	I	H	H	Y	Q	Q	C	.	.	.	.	V	D	H	A	X	K	L	Q	X	L	G	G	D	S	L	R	L	L	K	P	G	G	S	L
Template Known Secondary structure		T		S	S		S					G	G	G				G	G	G										.	.	.	.	.	.	.	.	.	.	.							S	S						.	.	.	.														G	G	G	G
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template SS confidence
		1193	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220												.	.	.	.	.	.	.	.	.	1230	.	.	.					.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.
		259	260
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1258	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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