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Job DescriptionP39199
Confidence86.63%DateThu Jan 5 11:58:28 GMT 2012
Rank356Aligned Residues141
% Identity20%Templatec3ps9A_
PDB info PDB header:transferaseChain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of mnmc from e. coli
Resolution2.54 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   130.........140.........150...... ...160... ...... 170.........
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Query Sequence  SKQPQHILDMCTGSGCIAIACAYAFPD. . . . . . . . . . . . AEVDAVD. . . ISPDAL. . . . . . . . . . . AVAEQNIEEH. . . .
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Template Sequence  PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL
Template Known Secondary structure  SSS

TTS
TTSS

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TT
GGG




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   56...60.........70.........80.........90.........100.........110.........120.........130.....
 
   180.........190........ .200.........210.........220.........230.........240....
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Query Sequence  . . . . . . . . . GLIHNVIPIRSDLFRDLPK. . . . . . VQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGTDGLKLTRRI
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Template Sequence  PGCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLD. GFAPAKNPDMWTQNL. . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SGGGTS
GGGB
GGGTT

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GGG
GGGS
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   136...140.........150.........160.........170........ .180.........190...
 
   245....250.........260.........270.........280.........290....
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Query Sequence  LGNAADYLADDGVLICEVGNSMVHLMEQYPDVPFTWLEFDNGGDGVFMLT
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Template Sequence  FNAMARLARPGGTLA. . TFTSAGFVRRGLQDAGFTMQKRKGFGRKREMLC
Template Known Secondary structure  ..S


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   194.....200........ .210.........220.........230.........240.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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