Job Description P39199 Confidence 99.93% Date Thu Jan 5 11:58:28 GMT 2012 Rank 5 Aligned Residues 235 % Identity 15% Template c3ocjA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis Resolution 1.39 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																																																.	.	.
Query SS confidence																																																																.	.	.
Query Sequence		G	T	D	N	P	W	D	E	A	V	Q	L	V	L	P	S	L	Y	L	P	L	D	I	P	E	D	M	R	T	A	R	L	T	S	S	E	K	H	R	I	V	E	R	V	I	R	R	V	N	E	R	I	P	V	A	Y	L	T	N	K	A	W	.	.	.	F	C	G	H	E	F	Y	V	D	E	R	V	L	V	P
Query Conservation																																																																.	.	.
Alig confidence																																								.	.	.																						.	.	.
Template Conservation																																								.	.	.
Template Sequence		X	S	P	S	S	H	R	A	A	S	A	D	L	A	G	X	V	R	Q	A	R	Q	R	I	L	L	Q	G	N	V	P	G	F	D	V	A	R	Q	.	.	.	I	E	L	L	H	G	L	A	E	S	E	L	G	R	F	L	L	L	Y	R	G	L	N	A	E	W	T	H	R	L	V	T	H	Q	P	G	S	G	A
Template Known Secondary structure								S																							B	T	T	B						.	.	.										S										S	S														T	T		S
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130																	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		R	S	P	I	G	E	L	I	N	N	K	F	A	G	L	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	P	Q	H	I	L	D	M	C	T	G	S	G	C	I	A	I	A	C	A	.	Y	A	F	P	D	A	E	V	D	A	V	D	I	S	P	D	A	L	A	V	A	E	Q	N	I
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		L	A	P	L	E	R	V	F	Y	E	R	L	P	A	V	L	A	T	R	E	R	H	G	H	F	R	R	A	L	Q	R	H	L	R	P	G	C	V	V	A	S	V	P	C	G	W	X	S	E	L	L	A	L	D	Y	S	A	C	P	G	V	Q	L	V	G	I	D	Y	D	P	E	A	L	D	G	A	T	R	L	A
Template Known Secondary structure																																				T	T						T	T		T	T						T	S			T	T		T	T								S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	H	G	L	I	H	N	V	I	P	I	R	S	D	L	F	R	D	L	P	K	V	Q	Y	D	L	I	V	T	N	P	P	Y	V	D	A	E	D	M	S	D	L	P	N	E	Y	R	H	E	P	E	L	G	L	A	S	G	T	D	G	L	K	L	T	R	R	I	L	G	N	A	A	D	Y	L	A	D	D	G
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	H	A	L	A	G	Q	I	T	L	H	R	Q	D	A	W	K	L	D	T	R	E	G	Y	D	L	L	T	S	N	G	L	N	I	Y	E	P	D	D	A	R	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	Y	R	R	F	W	Q	A	L	K	P	G	G
Template Known Secondary structure		T	T	S	T	T	G	G	G								G	G	G					S									S	S	G	G	G									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.																							.	.	.	.	.	210	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.																																									.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence		V	L	I	C	E	V	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	M	V	H	L	M	E	Q	Y	P	D	V	P	F	T	W	L	E	F	.	.	D	N	G	G	D	G	V	F	M	L	T
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		A	L	V	T	S	F	L	T	P	P	P	A	L	S	P	D	S	P	W	D	X	Q	A	I	D	P	H	D	L	Q	L	Q	Q	L	V	F	T	R	L	I	Q	P	R	W	N	A	L	R	T	H	A	Q	T	R	A	Q	L	E	E	A	G	F	T	D	L	R	F	E	D	D	R	A	R	L	F	P	T	V	I	A
Template Known Secondary structure												T	T	T		T	T					G	G	G	S															T	T			S																	T	T										T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		295	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		299	300

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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