 |
Job Description | P39199 | Confidence | 79.30% | Date | Thu Jan 5 11:58:28 GMT 2012 |
Rank | 376 | Aligned Residues | 90 |
% Identity | 11% | Template | c3db2C_ |
PDB info |
PDB header:oxidoreductase | Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase; |
PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution
|
Resolution | 1.70 Å |
|
 |
  |   |
132 | . | . | . | . | . | . | . | 140 | . | . | |
. | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | |
. | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | |
. | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  | . |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Query Sequence |   |
Q | P | Q | H | I | L | D | M | C | T | G | . |
S | G | C | I | A | I | A | C | A | Y | A | F | P | D | A | E | V | D | . |
A | V | D | I | S | P | D | A | L | A | V | A | E | Q | N | I | E | E | H | G | L | I | H | N | V | I | P | I | R | S | D | L | F | R | D | L | P | K | V | Q | Y | D | . |
L | I | V | T | N | P |
Query Conservation |   |
  |   |   |
|
|
|
|
|
|   |
| . |
|
|   |
|   |
|   |
|
|   |   |   |
|   |   |   |
|   | . |
|   |
|
|
|   |   |
|
|   |   |
|   |   |
|   |   |   |   |
|
|   |   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
| . |   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|   |
|
|
|   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . |   |   |   | . |   |   |   |   |   |   |
|
|
|   |   |   |   |
|
|   |
|   |
|   |
|
|
Template Sequence |   |
N | P | V | G | V | A | A | I | G | L | G | R | W | A | Y | V | X | A | D | A | Y | T | K | S | E | K | L | K | L | V | T | C | Y | S | R | T | E | D | K | R | E | K | F | G | K | R | Y | . |
. |
. |
. |
. |
. |
. |
N | C | A | . |
G | D | A | T | X | E | A | L | L | A | R | E | D | V | E | X | V | I | I | T | V | P |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  | T | T |
| T | T |  |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | T |
|  | . |  |
| S | S |  |  |  |  |  | T |
| T | T |
|
|  |  |  |  |
| S |
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
|
|
| . |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
50 | . | . | |
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |
  |
  |   |
209 | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | Y | V | D | A | E | D | M | S | D | L | P | N | E | Y | R | H | E | P | E | L | G | L | A | S | G | T | D | G | L | K | L | T | R | R | I | L | G | N | A | A | D | Y | L | A | D | D | G | V | L | I | C | E |
Query Conservation |   |
|
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|
|   |
|
|   |   |
|
|   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |
|
|
|   |
|   |
|
|
Alig confidence |   |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|
|   |   |
|
|
|
|   |   |
|
Template Sequence |   |
N | D | K | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | E | V | I | E | Q | C | A | R | S | G | K | H | I | Y | V | E |
Template Known Secondary structure |   |
G | G | G |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
75 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|