Job Description P39199 Confidence 99.82% Date Thu Jan 5 11:58:28 GMT 2012 Rank 29 Aligned Residues 142 % Identity 22% Template c3c0kB_ PDB info PDB header:transferase Chain: B: PDB Molecule:upf0064 protein yccw; PDBTitle: crystal structure of a ribosomal rna methyltranferase Resolution 2.00 Å

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		100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		C	G	H	E	F	Y	V	D	E	R	V	L	.	.	V	P	R	S	P	I	G	E	L	I	N	N	K	F	A	G	L	I	S	K	Q	P	Q	H	I	L	D	M	C	T	G	S	G	C	I	A	I	A	C	A	Y	A	F	P	D	A	E	V	D	A	V	D	I	S	P	D	A	L	A	V	A	E	Q	N	I	E
Query Conservation														.	.
Alig confidence														.	.																			.	.																							.
Template Conservation																																		.	.																							.
Template Sequence		H	G	X	K	L	L	V	D	I	Q	H	G	H	K	T	G	Y	Y	L	D	Q	R	D	S	R	L	A	T	R	R	Y	V	.	.	E	N	K	R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A	L	X	G	.	G	C	S	Q	V	V	S	V	D	T	S	Q	E	A	L	D	I	A	R	Q	N	V	E
Template Known Secondary structure		T	T							T	T	T	S	S	T	T	S	S		G	G	G												.	.	T	T							T		T	T	T									T	.	T		S							S
Template Predicted Secondary structure																																		.	.																							.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		178	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure							.																.	.	.	.	.
Query SS confidence							.																.	.	.	.	.
Query Sequence		E	H	G	L	I	.	H	N	V	I	P	I	R	S	D	L	F	R	D	L	P	.	.	.	.	.	K	V	Q	Y	D	L	I	V	T	N	P	P	Y	V	D	A	E	D	M	S	D	L	P	N	E	Y	R	H	E	P	E	L	G	L	A	S	G	T	D	G	L	K	L	T	R	R	I	L	G	N	A	A	D	Y
Query Conservation							.																.	.	.	.	.
Alig confidence							.																.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	N	K	L	D	L	S	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	R	D	R	G	E	K	F	D	V	I	V	X	D	P	P	K	F	V	E	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	L	X	G	A	C	R	G	Y	K	D	I	N	X	L	A	I	Q	L
Template Known Secondary structure			T	T			G	G	G						S												T	T											S	S		S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S				T												T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.																	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	D	D	G	V	L	I	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	E	G	G	I	L	L	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions