Job Description P39199 Confidence 99.48% Date Thu Jan 5 11:58:28 GMT 2012 Rank 213 Aligned Residues 150 % Identity 17% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		89	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure							.	.	.	.																				.	.	.	.
Query SS confidence							.	.	.	.																				.	.	.	.
Query Sequence		P	V	A	Y	L	.	.	.	.	T	N	K	A	W	F	C	G	H	E	F	Y	V	D	E	R	V	L	V	.	.	.	.	P	R	S	P	I	G	E	L	I	N	N	K	F	A	G	L	I	S	K	Q	P	Q	H	I	L	D	M	C	T	G	S	G	C	I	A	I	A	C	A	Y	A	F	P	D	A	E	V	D
Query Conservation							.	.	.	.																				.	.	.	.
Alig confidence							.	.	.	.																				.	.	.	.										.	.
Template Conservation																																											.	.
Template Sequence		K	F	Q	H	L	T	I	F	E	S	D	P	K	G	P	W	G	T	V	X	A	L	D	G	C	I	Q	V	T	D	Y	D	E	F	V	Y	H	E	V	L	G	.	.	H	T	S	L	C	S	H	P	K	P	E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H	G	T	V	E	H	C	D
Template Known Secondary structure		S	S	S									T	T	S	S								T	T						T	T	T										.	.					T	T	S	S											T	T	S							T	T		T	T
Template Predicted Secondary structure																																											.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																						.	.	.															.	.	.
Query SS confidence																						.	.	.															.	.	.
Query Sequence		A	V	D	I	S	P	D	A	L	A	V	A	E	Q	N	I	E	E	H	G	.	.	.	L	I	H	N	V	I	P	I	R	S	D	L	F	R	.	.	.	D	L	P	K	V	Q	Y	D	L	I	V	T	N	P	P	Y	V	D	A	E	D	M	S	D	L	P	N	E	Y	R	H	E	P	E	L	G	L	A	S	G
Query Conservation																						.	.	.															.	.	.
Alig confidence																						.	.	.															.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Sequence		L	V	D	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	L	A	F	V	R	Q	T	P	D	N	T	Y	D	V	V	I	I	D	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	A	S	K	L	F	G	.
Template Known Secondary structure					S																	G	G	G	G		T	T						S								T	S		T	T										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S		.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.																	.	180	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	G	L	K	L	T	R	R	I	L	G	N	A	A	D	Y	L	A	D	D	G	V	L	I	C	E	V	G	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	E	A	F	Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	G	E	S
Template Known Secondary structure		.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions