Job Description P39199 Confidence 96.96% Date Thu Jan 5 11:58:28 GMT 2012 Rank 321 Aligned Residues 140 % Identity 21% Template c2qy6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 Resolution 2.00 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.													.	.	.	160	.	.	.				.	.	.	.	.	.	170	.												.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.											.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.											.	.
Query Sequence		S	K	Q	P	Q	H	I	L	D	M	C	T	G	S	G	C	I	A	I	A	C	A	Y	A	F	P	D	.	.	.	.	.	.	.	.	.	.	.	.	A	E	V	D	A	V	D	.	.	.	I	S	P	D	A	L	A	V	.	.	.	.	.	.	.	.	.	.	.	A	E	Q	N	I	E	E	H	G	L	.	.
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.											.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation
Template Sequence		P	H	P	L	F	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L
Template Known Secondary structure		S	S	S							S			T	T	S																		T	T	S	S											S	S												T	T		G	G	G										T				S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
											182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	I	H	N	V	I	P	I	R	S	D	L	F	R	D	L	P	K	V	Q	.	.	.	.	.	.	Y	D	L	I	V	T	N	P	P	Y	V	D	A	E	D	M	S	D	L	P	N	E	Y	R	H	E	P	E	L	G	L	A	S	G	T	D	G	L	K	L	T	R	R	I	L	G
Query Conservation		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.								.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	C	H	R	L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	.	G	F	A	P	A	K	N	P	D	M	W	T	Q	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	N
Template Known Secondary structure		S																	S						G	G	G	S		G	G	G	T	T									.	S	S		T	T	T		G	G	G						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.																						.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	A	D	Y	L	A	D	D	G	V	L	I	C	E	V	G	N	S	M	V	H	L	M	E	Q	Y	P	D	V	P	F	T	W	L	E	F	D	N	G	G	D	G	V	F	M	L
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		A	M	A	R	L	A	R	P	G	G	T	L	A	.	.	T	F	T	S	A	G	F	V	R	R	G	L	Q	E	A	G	F	T	M	Q	K	R	K	G	F	G	R	K	R	E	M	L
Template Known Secondary structure															.	.		S														T									S	T	T
Template Predicted Secondary structure															.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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