Job Description P39199 Confidence 99.33% Date Thu Jan 5 11:58:28 GMT 2012 Rank 251 Aligned Residues 155 % Identity 16% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		89	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure									.																														.	.
Query SS confidence									.																														.	.
Query Sequence		P	V	A	Y	L	T	N	.	K	A	W	F	C	G	H	E	F	Y	V	D	E	R	V	L	V	P	R	S	P	I	G	E	L	I	N	N	K	.	.	F	A	G	L	I	S	K	Q	P	Q	H	I	L	D	M	C	T	G	S	G	C	I	A	I	A	C	A	Y	A	F	P	D	A	E	V	D	A	V	D	I	S
Query Conservation									.																														.	.
Alig confidence									.																														.	.
Template Conservation
Template Sequence		D	Y	Q	D	V	I	V	F	Q	S	A	T	Y	G	K	V	L	V	L	D	G	V	I	Q	L	T	E	R	D	E	C	A	Y	Q	E	X	I	T	H	L	P	L	C	S	I	P	N	P	K	K	V	L	V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	H	A	S	I	E	Q	I	D	X	C	E	I	D
Template Known Secondary structure		S	S									S	S	S		B					T	T						S	T	T									T					T	T	S	S	S								S		S	S	S							T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																	.	.	.
Query SS confidence																	.	.	.																	.	.	.
Query Sequence		P	D	A	L	A	V	A	E	Q	N	I	E	E	H	G	.	.	.	L	I	H	N	V	I	P	I	R	S	D	L	F	R	D	L	.	.	.	P	K	V	Q	Y	D	L	I	V	T	N	P	P	Y	V	D	A	E	D	M	S	D	L	P	N	E	Y	R	H	E	P	E	L	G	L	A	S	G	T	D	G	L	K
Query Conservation																	.	.	.																	.	.	.
Alig confidence																	.	.	.																	.	.	.															.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V	I	G	D	G	V	A	F	L	K	N	A	A	E	G	S	Y	D	A	V	I	V	D	S	S	D	.	P	I	G	P	A	K	E	L	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	T	T	G	G	G	T	T		T	T						S								S	S		S	S												.	S	S	S	G	G	G	G	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	R	R	I	L	G	N	A	A	D	Y	L	A	D	D	G	V	L	I	C	E	V	G	N
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	K	P	F	F	Q	S	V	A	R	A	L	R	P	G	G	V	V	C	T	Q	A	E	S
Template Known Secondary structure		.	.
Template Predicted Secondary structure		.	.
Template SS confidence
				215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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