Job Description P10121 Confidence 99.30% Date Thu Jan 5 11:32:03 GMT 2012 Rank 26 Aligned Residues 223 % Identity 19% Template c3nxsA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:lao/ao transport system atpase; PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp Resolution 2.30 Å

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		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		I	T	N	L	T	E	G	A	S	R	K	Q	L	R	D	A	E	A	L	Y	G	L	L	K	.	.	.	E	E	M	G	E	I	L	A	K	V	D	E	P	L	N	V	E	G	K	A	P	F	V	I	L	M	V	G	V	N	G	V	G	K	T	T	T	I	G	K	L	A	R	Q	F	E	Q	Q	G	K	S	V	M
Query Conservation																										.	.	.
Alig confidence																										.	.	.
Template Conservation
Template Sequence		V	H	E	L	A	Q	S	I	R	D	G	D	R	S	A	L	A	R	A	I	T	L	V	E	S	T	R	A	D	H	R	E	Q	A	Q	Q	L	L	L	D	L	M	P	E	A	G	S	A	M	H	V	G	I	T	G	V	P	G	V	G	K	S	T	T	I	E	A	L	G	M	H	L	I	E	A	G	H	R	V	A
Template Known Secondary structure												T																S														T	T	T	T	T	T		S									T	T	S																T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.				360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		L	A	A	G	D	T	F	R	A	A	A	V	E	Q	L	Q	V	W	G	Q	R	N	N	I	P	V	I	A	Q	H	T	G	A	D	.	.	.	S	A	S	V	I	F	D	A	I	Q	A	A	K	A	R	N	I	D	V	L	I	A	D	T	A	G	R	L	Q	N	K	S	H	L	M	E	E	L	K	K	I	V	R
Query Conservation																																				.	.	.
Alig confidence									.	.	.	.	.	.	.	.																				.	.	.																																					.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.
Template Sequence		V	L	A	V	D	R	M	.	.	.	.	.	.	.	.	A	R	L	A	V	H	P	D	A	Y	I	R	P	S	P	T	S	G	T	L	G	G	V	A	K	A	T	R	E	T	I	V	L	L	E	A	A	G	Y	D	V	I	L	V	E	T	V	G	V	G	Q	S	E	V	T	V	A	G	.	.	.	.	.	.	.
Template Known Secondary structure									.	.	.	.	.	.	.	.							T	T										S																			T	T												T	T							T	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.									.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.														.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	M	K	K	L	D	V	E	A	P	H	E	V	M	L	T	I	D	A	S	T	G	Q	N	A	V	S	Q	A	K	L	F	H	E	A	V	G	L	T	G	I	T	L	T	K	L	D	G	T	A	K	G	G	V	I	F	S	V	A	D	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	P	I	R
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																															.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																															.	.
Template Sequence		.	.	.	.	.	.	.	.	M	V	D	T	F	V	F	L	T	L	A	R	T	G	D	Q	L	Q	G	I	K	K	G	V	L	E	L	A	D	V	.	.	I	V	V	N	K	A	D	G	E	H	A	V	E	A	K	A	A	A	R	E	L	S	G	A	I	R	L	I	Y	P	R	E	S	L	W	R	P	P	V	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	T		S									S	S	S	S							T	T		G	G	G		S		.	.								G	G	G																			S		T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																															.	.
Template SS confidence
										167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		470	.	.			.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		Y	I	G	.	.	V	G	E	R	I	E	D	L	R	P	F	K	A	D	D	F	I	E	A	L	F	A	R	E	D
Query Conservation					.	.
Alig confidence					.	.												.
Template Conservation																		.
Template Sequence		T	M	S	A	V	E	G	T	G	L	P	E	L	W	E	T	.	V	L	R	H	R	E	V	L	E	E	A	G	E
Template Known Secondary structure					T	T	T		T	T								.											T	T
Template Predicted Secondary structure																		.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions