Job Description P10121 Confidence 97.21% Date Thu Jan 5 11:32:03 GMT 2012 Rank 275 Aligned Residues 140 % Identity 11% Template c3l9oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Resolution 3.39 Å

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		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.															.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	M	V	G	V	N	G	V	G	K	T	T	T	I	G	K	L	A	R	Q	F	E	Q	Q	G	K	S	V	M	L	A	A	G	D	T	F	R	A	A	A	V	E	Q	L	Q	V	W	G	Q	R	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	V	I	A	Q	H	T	G	A	D	S	A
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation																																			.	.																																							.
Template Sequence		V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	K	Q	R	V	I	Y	T	S	.	.	P	I	K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	F	G	D	V	G	L	M	T	G	D	I	T	I	N	P	D	A	G	C	L	V	M	.	T	T	E	I	L	R
Template Known Secondary structure								S	S	S																T	T								.	.	S	S															T	S	S						S	S		B				S		S					.
Template Predicted Secondary structure																																			.	.																																							.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I	F	D	A	I	Q	A	A	K	A	R	N	I	D	V	L	I	A	D	T	A	G	R	L	Q	N	K	S	H	L	M	E	E	L	K	K	I	V	R	V	M	K	K	L	D	V	E	A	P	H	E	V	M	L	T	I	D	A	S	T	G	Q	N	A	V	S	Q	A	K	L	F	H	E	A	V	G	L	T
Query Conservation
Alig confidence											.	.																								.										.	.	.	.	.	.															.	.
Template Conservation											.	.																								.										.	.	.	.	.	.															.	.
Template Sequence		S	M	L	Y	R	G	S	E	V	.	.	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	D	K	E	R	G	V	V	.	W	E	E	T	I	I	L	L	P	.	.	.	.	.	.	D	K	V	R	Y	V	F	L	S	A	T	I	P	N	.	.	A	M	E	F	A	E	W	I	C	K	I	H	S	Q
Template Known Secondary structure								S	S		.	.											T	G	G	G	T	T	S							.								S		.	.	.	.	.	.	T	T	S								S		S	S	.	.												T		S
Template Predicted Secondary structure											.	.																								.										.	.	.	.	.	.															.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.							.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.
		442	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	T	L	T	K	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	C	H	I	V	Y	T	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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