Job Description P10121 Confidence 97.91% Date Thu Jan 5 11:32:03 GMT 2012 Rank 142 Aligned Residues 155 % Identity 17% Template c3ievA_ PDB info PDB header:nucleotide binding protein/rna Chain: A: PDB Molecule:gtp-binding protein era; PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna Resolution 1.90 Å

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		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	F	V	I	L	M	V	G	V	N	G	V	G	K	T	T	T	I	G	K	L	A	R	Q	F	E	Q	Q	G	K	S	V	M	L	A	A	G	D	T	F	R	A	A	A	V	E	Q	L	Q	V	W	G	Q	R	N	N	I	P	V	I	A	Q	H	T	G	A	D	S	A	S	V	I	F	D	A	I	Q	A	A
Query Conservation
Alig confidence																									.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	G	Y	V	A	I	V	G	K	P	N	V	G	K	S	T	L	L	N	N	L	L	.	.	.	.	.	.	G	T	K	V	S	I	I	S	P	K	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	R	M	R	V	L	G	V	K	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	T	T	S	S										.	.	.	.	.	.	T	S			S				S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.				S									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.							.	.	.	.	.	30	.	.	.	.	.	.														.	.	.	40	.	.	.	.	.	.	.	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		K	A	R	N	I	D	V	L	I	A	D	T	A	G	R	L	Q	N	K	S	H	L	M	E	E	L	K	K	I	V	R	V	M	K	K	L	D	V	E	A	P	H	E	V	M	L	T	I	D	A	S	T	G	Q	N	A	V	S	Q	A	K	L	F	H	E	A	V	G	L	T	.	G	I	T	L	T	K	L	D	G
Query Conservation																																																																								.
Alig confidence		.																																																																						.
Template Conservation		.
Template Sequence		.	P	N	E	A	Q	I	I	F	L	D	T	P	G	I	Y	E	P	K	K	S	D	V	L	G	H	S	M	V	E	I	A	K	Q	S	L	E	E	A	D	V	I	L	F	M	I	D	A	T	E	G	W	R	P	R	D	E	E	I	Y	Q	N	F	I	K	P	L	N	K	P	V	I	V	V	I	N	K	I	D	K
Template Known Secondary structure		.	T	T	T																T	T																			S								T	T	T	B	S												T	G	G	G											G	G	G
Template Predicted Secondary structure		.
Template SS confidence
			49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.							.	.	.	.	.	.	470	.	.			.	.	.	.	.	.	.	480
Predicted Secondary structure															.	.	.	.	.	.										.	.
Query SS confidence															.	.	.	.	.	.										.	.
Query Sequence		T	A	K	G	G	V	I	F	S	V	A	D	Q	.	.	.	.	.	.	F	G	I	P	I	R	Y	I	G	.	.	V	G	E	R	I	E	D	L
Query Conservation															.	.	.	.	.	.										.	.
Alig confidence															.	.	.	.	.	.										.	.
Template Conservation
Template Sequence		I	G	P	A	K	N	V	L	P	L	I	D	E	I	H	K	K	H	P	E	L	T	E	I	V	P	I	S	A	L	K	G	A	N	L	D	E	L
Template Known Secondary structure		S	S	S	G	G	G	G												T	T								B	T	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions