Job Description P10121 Confidence 98.40% Date Thu Jan 5 11:32:03 GMT 2012 Rank 74 Aligned Residues 167 % Identity 14% Template c3ez6B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:plasmid partition protein a; PDBTitle: structure of para-adp complex:tetragonal form Resolution 2.58 Å

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		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.							.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																.																			.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.																			.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	E	E	M	G	E	I	L	A	K	V	D	E	P	L	N	V	E	G	K	A	P	F	V	I	L	M	V	G	.	V	N	G	V	G	K	T	T	T	I	G	K	L	A	R	Q	F	E	.	.	.	.	.	.	Q	Q	G	K	S	V	M	L	A	A	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																.																			.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.																			.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	Q	N	I	I	D	I	Y	E	H	R	G	V	P	K	Y	R	D	R	Y	S	E	A	Y	V	I	F	I	S	N	L	K	G	G	V	S	K	T	V	S	T	V	S	L	A	H	A	M	R	A	H	P	H	L	L	M	E	D	L	R	I	L	V	I	D	L	D	P	Q	S	S	A	T	M	F	L	S	H	K	H
Template Known Secondary structure												T	T									S	S									S	S	S	S	S	S																T	T	T	G	G	G											T	T								S		T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
																		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.																			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	R	A	A	A	V	E	Q	L	Q	V	W	G	Q	R	N	N	I	P	V	I	A	Q	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	A	D	S	A	S	V	I	F	D	A	I	Q	A	A	K	A	R	N	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	G	I	V	N	A	T	S	A	Q	A	M	L	Q	N	V	S	R	E	E	L	L	E	E	F	I	V	P	S	V	V	P	G	V	D	V	M	P	A	S	I	D	D	A	F	I	A	S	D	W	R	E	L	C	N	E	H	L	P	G	Q	N	I	H	A	V	L	K	E	N	V	I	D	K	L	K	S	D	Y
Template Known Secondary structure		T	T		S		S	S																			T					S	S	T	T								T	T							T									S	T	T	S		T	T	S						T					T	T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.															.	440	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	V	L	I	A	D	T	A	G	R	L	Q	N	K	S	H	L	M	E	E	L	K	K	I	V	R	V	M	K	K	L	D	V	E	A	P	H	E	V	M	L	T	I	D	A	S	T	G	Q	N	A	V	S	Q	A	K	L	F	H	E	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	T	G
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	I	L	V	D	S	G	P	.	.	H	L	D	A	F	L	K	N	A	L	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	I	L	F	T	P	L	P	P	A	T	V	D	F	H	S	S	L	K	Y	V	A	R	L	P	E	L	V	K	L	I	S	D	E	G	C	E	C	Q	L	A	T
Template Known Secondary structure		S								S	.	.			S										.	.	.	.	.	.	.	.	.	.	.	.	.	.		S								S	S												T	T											T	S
Template Predicted Secondary structure											.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.															.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		443	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	L	T	K	L	D	G	T	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	I	G	F	M	S	K	L	S	N	K
Template Known Secondary structure											S
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions