Job Description P10121 Confidence 97.34% Date Thu Jan 5 11:32:03 GMT 2012 Rank 256 Aligned Residues 141 % Identity 11% Template c2xgjA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.														.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	M	V	G	V	N	G	V	G	K	T	T	T	I	G	K	L	A	R	Q	F	E	Q	Q	G	K	S	V	M	L	A	A	G	D	T	F	R	A	A	A	V	E	Q	L	Q	V	W	G	Q	R	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	V	I	A	Q	H	T	G	A	D	S	A	S
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.
Template Sequence		V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	K	Q	R	V	I	Y	T	S	.	.	P	I	K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	F	G	D	V	G	L	M	T	G	D	I	T	I	N	P	D	A	G	C	L	V	M	T	T	E	I	L	R	S
Template Known Secondary structure								T	T	S																T	T								.	.	S	S																S							S	S					T	T		S
Template Predicted Secondary structure																																			.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	F	D	A	I	Q	A	A	K	A	R	N	I	D	V	L	I	A	D	T	A	G	R	L	Q	N	K	S	H	L	M	E	E	L	K	K	I	V	R	V	M	K	K	L	D	V	E	A	P	H	E	V	M	L	T	I	D	A	S	T	G	Q	N	A	V	S	Q	A	K	L	F	H	E	A	V	G	L	T	G
Query Conservation
Alig confidence										.	.																								.										.	.	.	.	.	.															.	.
Template Conservation										.	.																								.										.	.	.	.	.	.															.	.
Template Sequence		M	L	Y	R	G	S	E	V	.	.	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	D	K	E	R	G	V	V	.	W	E	E	T	I	I	L	L	P	.	.	.	.	.	.	D	K	V	R	Y	V	F	L	S	A	T	I	P	N	.	.	A	M	E	F	A	E	W	I	C	K	I	H	S	Q	P
Template Known Secondary structure						T		T	T	.	.	G	G	G								T	G	G	G	G	G		T	T	T				.								S		.	.	.	.	.	.	T	T											T	T	.	.													T	S
Template Predicted Secondary structure										.	.																								.										.	.	.	.	.	.															.	.
Template SS confidence
		245	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.							.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		443	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	L	T	K	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	H	I	V	Y	T	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions