Job Description P10121 Confidence 99.25% Date Thu Jan 5 11:32:03 GMT 2012 Rank 27 Aligned Residues 197 % Identity 17% Template c2wwwB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein Resolution 2.64 Å

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		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.											260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	V	G	V	E	T	T	R	K	I	I	T	N	L	T	E	G	A	S	R	K	.	.	.	.	.	.	.	.	.	.	Q	L	R	D	A	E	A	L	Y	G	L	L	K	E	E	M	G	E	I	L	A	K	V	D	E	P	L	N	V	E	G	K	A	P	F	V	I	L	M	V	G	V	N	G	V	G	K	T
Query Conservation																								.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.																																.
Template Conservation																																																																	.
Template Sequence		S	D	K	E	Q	R	F	V	D	K	L	Y	T	G	L	I	Q	G	Q	R	A	C	L	A	E	A	I	T	L	V	E	S	T	H	S	R	K	K	E	L	A	Q	V	L	L	Q	K	V	L	L	Y	H	R	E	Q	E	Q	S	N	K	G	K	P	.	L	A	F	R	V	G	L	S	G	P	P	G	A	G	K	S
Template Known Secondary structure																		T	T																S																								T	T	T	T			.	S	S									T	T	S	S
Template Predicted Secondary structure																																																																	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	I	G	K	L	A	R	Q	F	E	Q	Q	G	K	S	V	M	L	A	A	G	D	T	F	R	A	A	A	V	E	Q	L	Q	V	W	G	Q	R	N	N	I	P	V	I	A	Q	H	T	G	A	D	S	A	S	V	I	F	D	A	I	Q	A	A	K	A	R	N	I	D	V	L	I	A	D	T	A	G	R	L
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Sequence		T	F	I	E	Y	F	G	K	M	L	T	E	R	G	H	K	L	S	V	L	A	V	D	T	E	L	S	.	.	.	.	.	.	.	.	.	.	R	D	M	N	A	Y	I	R	P	T	R	T	T	N	E	A	I	L	L	C	E	.	.	.	.	.	.	.	G	A	G	Y	D	I	I	L	I	E	T	V	G	Q	S
Template Known Secondary structure														T	T												S	S	.	.	.	.	.	.	.	.	.	.	S		T	T							T	T										.	.	.	.	.	.	.		T	T		S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.											.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.								.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		Q	N	K	S	H	L	M	E	E	L	K	K	I	V	R	V	M	K	K	L	D	V	E	A	P	H	E	V	M	L	T	I	D	A	S	T	G	Q	N	A	V	S	Q	A	K	L	F	H	E	A	V	G	L	T	G	I	T	L	T	K	L	D	G	T	A	K	G	G	V	I	F	S	V	A	D	Q	F	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	F	A	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	M	V	D	M	F	V	L	L	L	P	P	I	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	A	D	L	V	A	V	T	K	S	D	G	D	L	I	V	P	A	R	R	I	Q	A	E	Y	V	S	A	L
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S										T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S								S	T	T	S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		250	.	.	.	.																		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.															270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
												465	.	.	.	.	470	.	.			.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	G	I	P	I	R	Y	I	G	.	.	V	G	E	R	I	E	D	L	R	P	F
Query Conservation		.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation
Template Sequence		K	L	L	R	K	R	S	Q	V	W	K	P	K	V	I	R	I	S	A	R	S	G	E	G	I	S	E	M	W	D	K
Template Known Secondary structure		T	T	S			S		S	S										T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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