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Job DescriptionP10121
Confidence97.52%DateThu Jan 5 11:32:03 GMT 2012
Rank222Aligned Residues186
% Identity14%Templatec2v1uA_
PDB info PDB header:replicationChain: A: PDB Molecule:cell division control protein 6 homolog; PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   268.270.........280.........290.........300.........310.........320.. .......330.........340.
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Query Sequence  YGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK. . . . . . SVMLAAGDTFRAAAVEQLQ
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Template Sequence  REAELRRLAEVLAP. . . . . ALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA
Template Known Secondary structure 
TTGG.....GTSS





B
TTSST

TTTS
S
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   36...40......... 50.........60.........70.........80.........90.........100.........110
 
   342.......350.........360.........370.........380.........390.........400.........410.........420.
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Query Sequence  VWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA
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Template Sequence  IAEAVGVRVPFTGLSVGEVYERLVKRLSR. . LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQ. . . . . . . ELVSLVGIT
Template Known Secondary structure  S



SS


TT..S
STTTSTTGGG.......



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   111........120.........130......... 140.........150.........160.........170.. .......180.
 
   422.......430.........440.........450.........460.......
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Query Sequence  STGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIP
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Template Sequence  NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNP
Template Known Secondary structure  S
STTSSSS
TTTTS

B



B
T
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   187..190.........200.........210.........220.........230..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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