Job Description P10121 Confidence 96.68% Date Thu Jan 5 11:32:03 GMT 2012 Rank 393 Aligned Residues 133 % Identity 16% Template c2pcjB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold; PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5 Resolution 1.70 Å

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		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.																									.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Query Sequence		K	V	D	E	P	L	N	V	E	G	K	A	P	F	V	I	L	M	V	G	V	N	G	V	G	K	T	T	T	I	G	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	Q	F	E	Q	Q	G	K	S	V	M	L	A	A	G	D	T	F	.	.	.	.
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Alig confidence																																.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																																.
Template Sequence		E	I	L	K	G	I	S	L	S	V	K	K	G	E	F	V	S	I	I	G	A	S	G	S	G	K	S	T	L	L	.	Y	I	L	G	L	L	D	A	P	T	E	G	K	V	F	L	E	G	K	E	V	D	Y	T	N	E	K	E	L	S	L	L	R	N	R	K	L	G	F	V	F	Q	F	H	Y	L	I	P	E
Template Known Secondary structure													T	T									T	T	S							.				T	T	S	S			S							T	T					T	T																		S	S					T	T
Template Predicted Secondary structure																																.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
																			333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.			.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	A	A	V	E	Q	L	Q	V	W	G	Q	R	N	N	I	P	V	I	A	Q	H	T	G	A	D	S	A	S	V	I	F	D	A	I	Q	A	A	K	A	.	.	R	N	I	D	V	L	I	A	D	T	A	G	R	L	Q	N	K	S	H	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.														.
Template Conservation																																																																											.
Template Sequence		L	T	A	L	E	N	V	I	V	P	M	L	K	M	G	K	P	K	K	E	A	K	E	R	G	E	Y	L	L	S	E	L	G	L	G	D	K	L	S	R	K	P	Y	E	L	S	G	G	E	Q	Q	R	V	A	I	A	R	A	L	A	N	E	P	I	L	L	F	A	D	E	P	T	G	.	N	L	D	S	A	N
Template Known Secondary structure		S													T	T																	T	T		T	T		T	T			G	G	G	S															T	T			S						S	T	T	T	.	T	S
Template Predicted Secondary structure																																																																											.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	E	L	K	K	I	V	R	V	M	K	K	L	D	V	E	A	P	H	E	V	M	L	T	I	D
Query Conservation
Alig confidence															.	.	.	.	.
Template Conservation															.	.	.	.	.
Template Sequence		T	K	R	V	M	D	I	F	L	K	I	N	E	.	.	.	.	.	G	G	T	S	I	V	M	V	T
Template Known Secondary structure															.	.	.	.	.	T	T
Template Predicted Secondary structure															.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.						.	190	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions