Job Description P10121 Confidence 97.11% Date Thu Jan 5 11:32:03 GMT 2012 Rank 306 Aligned Residues 174 % Identity 18% Template c2ia5C_ PDB info PDB header:transferase Chain: C: PDB Molecule:polynucleotide kinase; PDBTitle: t4 polynucleotide kinase/phosphatase with bound sulfate and2 magnesium. Resolution 2.90 Å

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		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.															.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	F	V	I	L	M	V	G	V	N	G	V	G	K	T	T	T	I	G	K	L	A	R	Q	F	E	Q	Q	G	K	S	V	M	L	A	A	G	D	T	F	R	A	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	Q	L	Q	V	W	G	Q	R	N	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		K	K	I	I	L	T	I	G	C	P	G	S	G	K	S	T	.	.	.	.	W	A	R	E	F	I	A	K	N	P	G	F	Y	N	I	N	R	D	D	Y	R	Q	S	I	M	A	H	E	E	R	D	E	Y	K	Y	T	K	K	K	E	G	I	V	T	G	M	Q	F	D	T	A	K	S	I	L	Y	G	G	D	S
Template Known Secondary structure											T	T	S	S				.	.	.	.									S	T	T														T	T		S	S	G	G	G																								T	S		T	T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.					.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.															.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.					.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Query Sequence		N	I	P	V	I	A	Q	H	T	G	A	D	S	A	S	V	I	F	D	A	I	Q	A	A	K	A	R	N	I	D	V	L	I	A	D	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	L	Q	N	K	S	H	L	M	E	E	L	K	K	I	V	R	V	M	K	K	L	.	.	.	.	D	V
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Alig confidence																			.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																			.
Template Sequence		V	K	G	V	I	I	S	D	T	N	L	N	P	E	R	R	L	.	A	W	E	T	F	A	K	E	Y	G	W	K	V	E	H	K	V	F	D	V	P	W	T	E	L	V	K	R	N	S	K	R	G	T	K	A	V	P	I	D	V	L	R	S	M	Y	K	S	M	R	E	Y	L	G	L	P	V	Y	N	G	T	P
Template Known Secondary structure									S				S						.										T																					S		G	G	G																			T								T
Template Predicted Secondary structure																			.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.																	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.								.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Query Sequence		E	A	P	H	E	V	M	L	T	I	D	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	Q	N	A	V	S	Q	A	K	L	F	H	E	A	V	G	L	T	G	I	T	L	T	K	L	D	G	T	A	K	G	G	V	I	F	S	V	A	D	Q	.	.	.	.	.	.	.	F	G	I
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	P	K	A	V	I	F	D	V	D	G	T	L	A	K	M	N	G	P	Y	D	L	E	K	C	D	T	D	V	I	N	P	M	V	V	E	L	S	K	M	Y	A	L	M	G	Y	Q	I	V	V	V	S	G	R	E	S	G	T	K	E	D	P	T	K	Y	Y	R	M	T	R	K	W	V	E	D	I	A	G	V
Template Known Secondary structure		T	S								T	B	T	T	T	B								T	T				S	T	T	B													T	T	T									S					S	S		T	T											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		467	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	R	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	V	M	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions