Job Description P10121 Confidence 96.60% Date Thu Jan 5 11:32:03 GMT 2012 Rank 406 Aligned Residues 199 % Identity 15% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	L	L	K	T	K	E	N	L	G	S	G	F	I	S	L	F	R	G	K	K	I	D	D	D	L	F	E	E	L	E	E	Q	L	L	I	A	D	V	G	V	E	T	T	R	K	I	I	T	N	L	T	E	G	A	S	R	K	Q	L	R	D	A	E	A	L	Y	G	L	L	K	E	E	M	G	E	I	L	A
Query Conservation
Alig confidence																				.	.	.	.	.	.																																																		.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.																																																		.	.	.	.	.	.	.
Template Sequence		D	A	W	S	R	A	R	Q	K	A	A	E	K	V	R	D	V	A	.	.	.	.	.	.	A	E	L	L	D	I	Y	A	Q	R	A	A	K	E	G	F	A	F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	.	.	.	.	.	.	.
Template Known Secondary structure		S																		.	.	.	.	.	.												T	S																		T			S																.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.																																																		.	.	.	.	.	.	.
Template SS confidence
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.							.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.						.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.
Query Sequence		K	V	D	E	P	L	N	V	E	G	K	A	P	F	V	I	L	M	V	G	V	N	G	V	G	K	T	T	T	I	G	K	L	A	R	Q	F	E	Q	Q	G	K	S	V	M	L	A	A	G	D	T	F	R	A	A	A	V	E	Q	L	Q	V	W	G	Q	R	.	.	.	.	.	N	N	I	P	V	I	A	Q	H
Query Conservation																																																																				.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																												.	.																.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																												.	.
Template Sequence		.	.	.	.	.	.	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	Q	V	A	V	L	V	P	.	.	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F
Template Known Secondary structure		.	.	.	.	.	.				S	S	S												T	T	T													T	T	T								S	.	.	S															S	T	T	T	T							S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.																																												.	.
Template SS confidence
								615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.			.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370																	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	G	A	D	S	A	S	V	I	F	D	A	I	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	A	R	N	I	D	V	L	I	A	D	T	A	G	R	L	Q	N	K	S	H	L	M	E	E	L	K	K	I	V	R	V	M	K	K	L	D	V	E	A	P	H	E	V	M	L	T	I
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.														.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	.	.	F	G	V	R	H	K	E	R	I	K	A	M	R	.	.	.	.	.	.	.	.	.	.	A	N	V	D	I	L	T	L
Template Known Secondary structure		S														T	T			S						T					S					S	S								S	G	G	G	.	.	S													.	.	.	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure																																																	.	.														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		687	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.			.	.	.	.	.	.	740	.	.	.	.	.	.											.	.	.	750	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	S	T	G	Q	N	A	V	S	Q	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	T	P	I	P	R	T	L	N	M	A	M
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
		755	.	.	.	.	760	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions