Job Description P10121 Confidence 98.44% Date Thu Jan 5 11:32:03 GMT 2012 Rank 71 Aligned Residues 220 % Identity 20% Template c1xzqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable trna modification gtpase trme; PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf Resolution 2.90 Å

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		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		A	R	L	K	R	S	L	L	K	T	K	E	N	L	G	S	G	F	I	S	L	F	R	G	K	K	I	D	D	D	L	F	E	E	L	E	E	Q	L	L	I	A	D	V	G	V	E	T	T	R	K	I	I	T	N	L	T	E	G	A	.	.	S	R	K	Q	L	R	D	A	E	A	L	Y	G	L	L	K	E	E
Query Conservation																																																														.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.
Template Sequence		T	S	L	K	L	S	L	R	N	L	K	G	G	L	R	D	F	V	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	R	E	L	I	E	.	.	.	.	.	.	.	.	.	.	V	L	A	E	I	R	V	E	L	D	Y	P	D	E	I	E	T	N	T	G	E	V	V	T	R	L	E	R	I
Template Known Secondary structure											T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.												S	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.															.	.	.	.	160	.	.											.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		M	G	E	I	L	A	K	V	D	E	P	L	N	V	E	G	.	K	A	P	F	V	I	L	M	V	G	V	N	G	V	G	K	T	T	T	I	G	K	L	A	R	Q	F	E	Q	Q	G	K	S	V	M	L	A	A	G	D	T	F	R	A	A	A	V	E	Q	L	Q	V	W	G	Q	R	N	N	I	P	V	I	A
Query Conservation																		.
Alig confidence																		.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template Sequence		K	E	K	L	T	E	E	L	K	K	A	D	A	G	I	L	L	N	R	G	L	R	M	V	I	V	G	K	P	N	V	G	K	S	T	L	L	N	R	L	L	N	E	D	R	A	I	V	T	D	I	P	G	T	T	R	D	V	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	I	V	.
Template Known Secondary structure											S																			T	T	G	G	G	S										T	B										S			S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.																.	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.				.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence		Q	H	T	G	A	D	S	A	S	V	I	F	D	A	I	Q	A	A	K	A	R	N	I	D	V	L	I	A	D	T	A	G	R	L	Q	N	K	S	H	L	M	E	E	L	.	.	.	K	K	I	V	R	V	M	K	K	L	D	V	E	A	P	H	E	V	M	L	T	I	D	A	S	T	G	Q	N	A	V	S	Q
Query Conservation																																														.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.									.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	G	I	L	F	R	I	V	D	T	A	G	V	R	S	E	T	N	D	L	V	E	R	L	G	I	E	R	T	L	Q	E	I	E	K	.	.	.	.	.	.	A	D	I	V	L	F	V	L	D	A	S	S	P	L	D	E	E	D	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T								S	S				S	S			S	S																.	.	.	.	.	.		S								S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template SS confidence
																					256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.							.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450		.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.			.	.	.	.	.	.	.	480	.
Predicted Secondary structure																						.																							.	.
Query SS confidence																						.																							.	.
Query Sequence		A	K	L	F	H	E	A	V	G	L	T	G	I	T	L	T	K	L	D	G	.	T	A	K	G	G	V	I	F	S	V	A	D	Q	F	G	I	P	I	R	Y	I	G	.	.	V	G	E	R	I	E	D	L	R
Query Conservation																						.																							.	.
Alig confidence																						.																							.	.
Template Conservation
Template Sequence		K	I	L	E	R	I	K	N	K	R	Y	L	V	V	I	N	K	V	D	V	V	E	K	I	N	E	E	E	I	K	N	K	L	G	T	D	R	H	M	V	K	I	S	A	L	K	G	E	G	L	E	K	L	E
Template Known Secondary structure							G	G	G	S	S									S	S				S									T	S		S	T	T						T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions