Job Description P10121 Confidence 96.28% Date Thu Jan 5 11:32:03 GMT 2012 Rank 441 Aligned Residues 155 % Identity 13% Template c1xpuB_ PDB info PDB header:transcription/rna Chain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb) Resolution 3.05 Å

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		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		K	A	P	F	V	I	L	M	V	G	V	N	G	V	G	K	T	T	T	I	G	K	L	A	R	Q	F	E	Q	Q	G	K	S	V	M	L	A	A	G	D	T	F	R	A	A	A	V	E	Q	L	Q	V	W	G	Q	R	N	N	I	P	V	I	A	Q	H	T	G	A	D	S	A	S	V	I	F	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																															.	.																													.	.	.	.	.
Template Conservation																																															.	.
Template Sequence		G	R	G	Q	R	G	L	I	V	A	P	P	K	A	G	K	T	M	L	L	Q	N	I	A	Q	S	I	A	Y	N	H	P	D	C	V	L	M	V	L	L	I	D	E	R	P	.	.	E	E	V	T	E	M	Q	R	L	V	K	G	E	V	V	A	S	T	F	D	E	P	A	S	R	H	V	Q	V	A	E	M	V
Template Known Secondary structure			T	T									S	S	S	S																	T	T	S												.	.											S	S							T	T	S
Template Predicted Secondary structure																																															.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
			366	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.															.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.													.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.													.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	D	A	I	Q	A	A	K	A	R	N	I	D	.	V	L	I	A	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	R	L	Q	N	K	S	H	L	M	E	E	L	K	K	I	V	R	V	M	K	K	L	D	V	E	A	P	H	E	V	M	L	T	I	D	A	S	T	G	Q	N	A	V	S
Query Conservation		.													.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.													.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	K	A	K	R	L	V	E	H	K	K	D	V	I	I	L	L	D	S	I	T	R	L	A	R	A	Y	N	T	V	V	P	A	V	L	T	G	G	V	D	A	N	A	L	H	R	P	K	R	F	F	G	A	A	R	N	V	E	E	G	G	S	L	T	I	I	A	T	A	L	I	D	T	G	S	K	M	D	E
Template Known Secondary structure											T	T										S											S				B	S	S	S	S	B	G	G	G	G									T					T	T	S													S	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	K	L	F	H	E	A	V	G	L	T	G	I	T	L	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	Y	E	E	F	K	G	T	G	N	M	E	L	H	L	S	R
Template Known Secondary structure						T	T	T	T	T	S	S					B
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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