 |
Job Description | P10121 | Confidence | 97.68% | Date | Thu Jan 5 11:32:03 GMT 2012 |
Rank | 194 | Aligned Residues | 117 |
% Identity | 24% | Template | c1w36G_ |
PDB info |
PDB header:recombination | Chain: G: PDB Molecule:exodeoxyribonuclease v alpha chain; |
PDBTitle: recbcd:dna complex
|
Resolution | 3.1 Å |
|
 |
  |   |
294 | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | |
|
|
. | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | |
|
. | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | V | I | L | M | V | G | V | N | G | V | G | K | T | T | T | I | G | K | L | A | R | Q | F | E | Q | Q | . |
. |
. |
G | K | S | V | M | L | A | A | G | D | T | F | R | A | A | A | V | E | Q | L | Q | . |
. |
V | W | G | Q | R | N | N | I | P | V | I | A | Q | H | T | G | A | D | S | A | S | V | I | F | D | A | I |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |
|   |
|
|
|
|
|   |
|
|
|
|   |   |   |   |   |   | . | . | . |   |   |   |
|   |   |   |   |   |
|
|   |
|   |   |
|   |   |
|
|   | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |
|   |
|
|
|
|
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
Template Sequence |   |
R | I | S | V | I | S | G | G | P | G | T | G | K | T | T | T | V | A | K | L | L | A | A | L | I | Q | M | A | D | G | E | R | C | R | I | R | L | A | A | P | T | G | K | A | A | A | R | L | T | E | S | L | G | K | A | L | R | Q | L | P | L | T | D | E | Q | K | K | R | I | P | E | D | A | S | T | L | H | R | L | L |
Template Known Secondary structure |   |
S |  |  |  |  |  |
|
| T | T | S | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S | S | S |
|
|
|  |  |  |  | B | S | S |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  | S | T | T |
|
| S |
|
|
|
| S |
| S |
|
|
| B | T | T | T | S |
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
165 | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . |
  |
  |   |
369 | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | A | A | K | A | R | N | I | D | V | L | I | A | D | T | A | G | R | L | Q | N | K | S | H | L | M | E | E | L | K | K | I | V | R | V | M | K | K | L | D | V | E | A | P | H | E | V | M | L | T | I | D |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
| . | . |
|   |   |   |   |   |   |   |   |
|
|   |
|
| . | . | . | . | . | . | . | . |   |   |   |   |   |
|
|
|
|
|
|
Template Sequence |   |
H | A | G | N | P | L | H | L | D | V | L | V | V | D | E | A | S | . |
. |
M | I | D | L | P | M | M | S | R | L | I | D | A | L | . |
. |
. |
. |
. |
. |
. |
. |
P | D | H | A | R | V | I | F | L | G | D |
Template Known Secondary structure |   |
| T | T | S |
|
| S |
| S |  |  |  |  |
| S | G | G | . | . | G |
| B |  |  |  |  |  |  |  |  |  |  | S | . | . | . | . | . | . | . | . |
| T | T |
|  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
256 | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | |
|
. | . | . | . | . | . | . | 280 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | 290 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|