Job Description P25798 Confidence 100.00% Date Thu Jan 5 11:42:39 GMT 2012 Rank 1 Aligned Residues 163 % Identity 21% Template c2y9jt_ PDB info PDB header:protein transport Chain: T: PDB Molecule:protein prgh; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution Resolution 6.40 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.				.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																			.	.	.																														.
Query SS confidence																																			.	.	.																														.
Query Sequence		R	T	L	F	S	N	L	S	D	Q	D	G	G	A	I	V	S	Q	L	T	Q	M	N	I	P	Y	R	F	S	E	A	S	G	.	.	.	A	I	E	V	P	A	D	K	V	H	E	L	R	L	R	L	A	Q	Q	G	L	P	K	G	G	A	V	G	F	.	E	L	L	D	Q	E	K	F	G	I	S	Q	F	S
Query Conservation																																			.	.	.																														.
Alig confidence																																			.	.	.																														.
Template Conservation
Template Sequence		K	D	L	L	K	G	L	D	Q	E	Q	A	N	E	V	I	A	V	L	Q	M	H	N	I	E	A	N	K	I	D	S	G	K	L	G	Y	S	I	T	V	A	E	P	D	F	T	A	A	V	Y	W	I	K	T	Y	Q	L	P	P	R	P	R	V	E	I	A	Q	M	F	P	A	D	S	L	V	S	S	P	R	A
Template Known Secondary structure																							T	T									T	T	S								G	G	G											T	T		S							T	T			T	T	T		S				S
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		E	Q	V	N	Y	Q	R	A	L	E	G	E	L	S	R	T	I	E	T	I	G	P	V	K	G	A	R	V	H	L	A	M	P	K	P	S	L	F	V	.	R	E	Q	K	S	P	S	A	S	V	T	V	N	L	L	P	G	R	A	L	D	E	G	Q	I	S	A	I	V	H	L	V	S	S	A	V	A	G	L	P
Query Conservation																																									.
Alig confidence																																									.																						.
Template Conservation																																																															.
Template Sequence		E	K	A	R	L	Y	S	A	I	E	Q	R	L	E	Q	S	L	Q	T	M	E	G	V	L	S	A	R	V	H	I	S	Y	D	I	D	A	G	E	N	G	R	P	P	K	P	V	H	L	S	A	L	A	V	Y	E	R	G	S	P	L	A	.	H	Q	I	S	D	I	K	R	F	L	K	N	S	F	A	D	V	D
Template Known Secondary structure																			T	T	S	T	T																B	T	T	B															T	T				G	.	G	G												S	T	T
Template Predicted Secondary structure																																																															.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	N	V	T	L	V	D	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	N	I	S	V	V	L	S
Template Known Secondary structure		G	G	G
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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