Return to main results Retrieve Phyre Job Id

Job DescriptionP60293
Confidence28.15%DateThu Jan 5 12:06:42 GMT 2012
Rank63Aligned Residues129
% Identity16%Templated1lj9a_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain MarR-like transcriptional regulators
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 






















Query SS confidence 















































































Query Sequence  EFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMV
Query Conservation                    

 
    
 

 
 
    
    
  
  
 
 

 
        

   





  

Alig confidence 

































......













...........














Template Conservation   
              
   


  
   
  
 ......     
  


  
........... 
   


  
  
 
Template Sequence  EIGMIARALDSISNIEFKELSLTRGQYLYLVRVC. . . . . . ENPGIIQEKIAELI. . . . . . . . . . . KVDRTTAARAIKRLE
Template Known Secondary structure  TGGGT
TTT......STT...........T

Template Predicted Secondary structure 



......




...........


Template SS confidence 















































































   7..10.........20.........30.........40 .........50.... .....60.........
 
   83......90.........100.........110.........120........ .130.........140........
Predicted Secondary structure 







.....



Query SS confidence 













































. . . . .



















Query Sequence  RQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREFSTLRLSMQ. . . . . LSIVAGELKRAADAAEEGGD
Query Conservation 




 
      
    



 

  
  

    


   

 
.....   
  

     

 
   
Alig confidence 













































.....



















Template Conservation    
 
 
     
 
   
 

  
                     
  

   
   
  
   
     
Template Sequence  EQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWE
Template Known Secondary structure  TTS
SS
TT

TTT

Template Predicted Secondary structure 











Template SS confidence 






































































   70.........80.........90.........100.........110.........120.........130.........140
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions