Job Description P60293 Confidence 42.59% Date Thu Jan 5 12:06:42 GMT 2012 Rank 41 Aligned Residues 105 % Identity 10% Template c2o59B_ PDB info PDB header:isomerase/dna Chain: B: PDB Molecule:dna topoisomerase 3; PDBTitle: structure of e. coli topoisomerase iii in complex with an 8-2 base single stranded oligonucleotide. frozen in glycerol3 ph 8.0 Resolution 2.50 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.												.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	E	G	E	L	V	D	A	F	R	H	V	S	D	A	F	E	Q	.	.	.	.	.	.	.	.	.	.	.	T	S	E	T	I	G	V	R	A	N	N	A	I	N	D	M	V	R	Q	R	L	L	N	R	F	T	S	E	Q	A	E	G	N	A	I	Y	R	L	T	P	L	G	I	G	I	T	D	Y	Y	I
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.												.													.	.	.	.	.	.	.																			.
Template Conservation																																											.													.	.	.	.	.	.	.																			.
Template Sequence		F	T	D	A	T	L	L	S	A	M	T	G	I	A	R	F	V	Q	D	K	D	L	K	K	I	L	R	A	T	D	G	L	G	T	E	A	T	R	A	G	I	.	I	E	L	L	F	K	R	G	F	L	T	K	.	.	.	.	.	.	.	K	G	R	Y	I	H	S	T	D	A	G	K	A	L	F	H	S	L	.
Template Known Secondary structure													T	G	G	G	G													T	T	S	S	S		T	T	T					.							T	T	S				.	.	.	.	.	.	.	S	S	S															S	.
Template Predicted Secondary structure																																											.													.	.	.	.	.	.	.																			.
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.		.	.	.	.	.	.	.	.	540	.	.	.								.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	R	E	F	S	T	L	R	L	S	M	Q	L	S	I	V	A	G	E	L	K	R	A	A	D	A	A	E	E	G	G	D	E	F	H	W	H	R	N	V	Y	A	P	L	K	Y	S	V	A	E	I
Query Conservation
Alig confidence		.																								.	.	.	.	.	.
Template Conservation		.																								.	.	.	.	.	.
Template Sequence		.	P	E	M	A	T	R	P	D	M	T	A	H	W	E	S	V	L	T	Q	I	S	E	K	.	.	.	.	.	.	Q	C	R	Y	Q	D	F	M	Q	P	L	V	G	T	L	Y	Q	L	I	D	Q	A
Template Known Secondary structure		.						S	S															T	T	.	.	.	.	.	.	S	S
Template Predicted Secondary structure		.																								.	.	.	.	.	.
Template SS confidence
			562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.							.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions