Job Description P60293 Confidence 54.67% Date Thu Jan 5 12:06:42 GMT 2012 Rank 28 Aligned Residues 108 % Identity 18% Template c2it0A_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	P	V	D	R	L	S	F	L	L	A	V	A	T	L	N	G	E	R	L	D	G	E	M	S	E	G	E	L	V	D	A	F	R	H	V	S	D	A	F	E	Q	T	S	E	T	I	G	V	R	A	N	N	A	I	N	D	M	V	R	Q	R	L	L	N	R	F	T	S	E	Q	A	E	G	N	A	I	Y	R
Query Conservation
Alig confidence																				.	.															.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation																				.	.															.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Sequence		E	L	V	D	T	T	E	M	Y	L	R	T	I	Y	D	L	E	E	.	.	E	G	V	T	P	L	R	A	R	I	A	E	R	L	.	.	.	.	.	.	.	.	.	.	.	D	Q	S	G	P	T	V	S	Q	T	V	S	R	M	E	R	D	G	L	L	R	V	.	.	.	.	.	.	A	G	D	R	H	L	E
Template Known Secondary structure				S	S															.	.	T	T												T	.	.	.	.	.	.	.	.	.	.	.	T																T	T	S				.	.	.	.	.	.		T	T
Template Predicted Secondary structure																				.	.															.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.												.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.							.	.	.	60	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	P	L	G	I	G	I	T	D	Y	Y	I	R	Q	R	E	F	S	T	L	R	L	S	M	Q	L	S	I	V	A	G	E	L	K	R	A	A	D	A	A	E	E	G	G	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	E	K	G	R	A	L	A	I	A	V	M	R	K	H	R	L	A	E	R	L	L	V	D	V	I	G	L	P	W	E	E	V	H	A	E	A	C	R	W	E	H	V	M	S	E
Template Known Secondary structure																											T	T															T	T	T
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions