Return to main results Retrieve Phyre Job Id

Job DescriptionP27125
Confidence4.98%DateThu Jan 5 11:43:12 GMT 2012
Rank16Aligned Residues307
% Identity7%Templated1pw4a_
SCOP infoMFS general substrate transporter MFS general substrate transporter Glycerol-3-phosphate transporter
Resolution3.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  ITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIVSWIILPWAISALLLPNFWAYYSSFSLSTRLPVFLFGAMWG
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Template Sequence  LSGISIAYGFSKFIMGSVSDRSNPRV. . . . . . . . . FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP
Template Known Secondary structure  S
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SSSST
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   6970.........80.........90.... .....100.........110.........120.........130.........
 
   85....90.........100.........110.........120.........130.........140.........150.........160....
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Query Sequence  IGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPIINGNFDVLISTEGGRMTLLGVLVALIGVGIVTRAGQLKERKMGI
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Template Conservation                                                                                  
Template Sequence  PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP
Template Known Secondary structure  TT
TTTTST

STT
T


SSTTT


S
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   140.........150.........160.........170.........180.........190.........200.........210.........
 
   165....170 .........180.........190.........200.........210.........220.........230..
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Query Sequence  KAEEFN. . . . . . . . . . . . LKKGLVLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYVVIMGGGAIINLGFC
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Template Sequence  IEEYKNDTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM
Template Known Secondary structure 
TTT




TTSS
BTTBS


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   220.........230.........240.........250.........260.........270.........280.........290.........
 
   233......240.... .....250.........260........
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Query Sequence  FIRLAKVKDLSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KADFSLAKSLIIHNVLLSTLGGLM
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Template Conservation                                               
                       
   
      
Template Sequence  SDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG
Template Known Secondary structure  TSTT
TTS

TT
TTS
TT
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   313......320.........330.........340.........350.........360.........370.........380.........390..
 
   269270.... .....280.........290.........300.........310.........320...
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Query Sequence  WYLQFF. FYAWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRRPVTV
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Template Sequence  YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK. . . RRHEQL
Template Known Secondary structure  SS
S...GG
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   393......400.........410.........420.........430......... 440.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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