Job Description P27125 Confidence 34.15% Date Thu Jan 5 11:43:12 GMT 2012 Rank 2 Aligned Residues 234 % Identity 11% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	Y	G	L	T	M	R	Y	L	G	M	S	M	G	I	G	I	A	I	G	I	T	L	I	V	G	T	L	M	T	P	I	I	N	G	N	F	D	V	L	I	S	T	E	G	G	R	M	T	L	L	G	V	L	V	A	L	I	G	V	G	I	V	T	R	A	G	Q	L	K	E	R	K	M	G	I	K	A	E
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.																																	.
Template Sequence		L	V	I	V	L	A	T	V	V	W	G	I	G	F	K	D	S	F	T	N	F	A	S	S	A	L	S	A	V	V	D	N	L	G	W	A	.	.	.	.	.	.	.	.	.	.	.	F	I	L	F	G	T	V	F	V	F	F	I	V	V	I	A	A	S	K	F	G	T	I	R	L	G	R	I	D	E	A	P	.
Template Known Secondary structure														S	S	S										T	T							T				.	.	.	.	.	.	.	.	.	.	.																		S	G	G	G	G			S	S	S	T	T				.
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.																																	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.												.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.						210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		E	F	N	L	K	K	G	L	V	L	A	V	M	C	G	I	F	S	A	G	M	S	F	A	M	N	A	A	K	P	M	H	E	A	A	A	A	L	G	V	D	P	.	.	.	.	.	L	Y	V	A	L	P	S	Y	V	V	I	M	G	G	G	A	I	I	N	L	G	F	C	F	I	R	L	A	K	V	K	D	L
Query Conservation																																												.	.	.	.	.
Alig confidence																																												.	.	.	.	.
Template Conservation
Template Sequence		E	F	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K
Template Known Secondary structure		S	S																																T			T	T	S		S	S														S																		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		243	.	.	.	.								.	.	250	.	.	.	.	.	.	.	.	.	260					.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure							.	.	.	.	.	.	.														.	.	.	.
Query SS confidence							.	.	.	.	.	.	.														.	.	.	.
Query Sequence		S	L	K	A	D	.	.	.	.	.	.	.	F	S	L	A	K	S	L	I	I	H	N	V	L	.	.	.	.	L	S	T	L	G	G	L	M	W	Y	L	Q	F	F	F	Y	A	W	G	H	A	R	I	P	A	Q	Y	D	Y	I	S	W	M	L	H	M	S	F	Y	V	L	C	G	G	I	V	G	L	V	L	K
Query Conservation							.	.	.	.	.	.	.														.	.	.	.
Alig confidence							.	.	.	.	.	.	.														.	.	.	.																															.	.					.
Template Conservation																																																													.	.					.
Template Sequence		Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	.	.	D	W	T	I	.	V	G	I	V	S	V	L	T	L	A	F	I	F	S
Template Known Secondary structure		S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S																															T	T	T	S					.	.					.											T	T	G	G
Template Predicted Secondary structure																																																													.	.					.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	W	N	N	A	G	R	R	P	V	T	V	L	S	L	G	C	V	V	I	I	V	A	A	N	I
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		A	I	S	G	V	.	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I
Template Known Secondary structure		G	T	T	S		.		S
Template Predicted Secondary structure							.
Template SS confidence
		294	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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