Job Description P0ADE4 Confidence 99.97% Date Thu Jan 5 11:20:47 GMT 2012 Rank 4 Aligned Residues 229 % Identity 17% Template c3mc8A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:alr2269 protein; PDBTitle: potra1-3 of the periplasmic domain of omp85 from anabaena Resolution 2.59 Å

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		25	.	.	.	.	30	.	.					.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		R	L	Q	V	E	G	L	S	.	.	.	.	G	Q	L	E	K	N	V	R	A	Q	L	S	T	I	E	S	D	E	V	T	P	D	R	R	F	R	A	R	V	D	D	A	I	R	E	G	L	K	A	L	G	Y	Y	Q	P	T	I	E	F	D	L	R	P	P	P	K	K	G	R	Q	V	L	I	A	K	V	T	P
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.																						.	.	.	.	.	.																		.	.	.
Template Conservation																																			.	.	.	.	.	.																		.	.	.
Template Sequence		E	V	L	V	R	P	Q	S	G	Q	L	T	P	E	L	E	T	Q	V	Y	N	V	I	R	T	Q	P	G	R	T	T	T	R	.	.	.	.	.	.	S	Q	L	Q	E	D	I	N	A	I	F	G	T	G	F	F	S	.	.	.	N	V	Q	A	S	P	E	D	T	P	L	G	V	R	V	S	F	I	V	Q	P
Template Known Secondary structure								S	S	S																		T	T	S					.	.	.	.	.	.												T	T	S				.	.	.										T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.																		.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.							.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.				.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		G	V	P	V	L	I	G	G	T	D	V	V	L	R	G	G	A	R	T	D	K	D	Y	L	K	L	L	D	.	T	R	P	A	I	G	T	V	L	N	Q	G	D	Y	E	N	F	K	K	S	L	T	S	I	A	L	R	K	G	Y	F	D	S	E	F	T	K	A	Q	L	G	I	A	L	G	L	H	K	A	F	W
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		N	P	V	L	S	K	V	E	I	Q	A	N	P	G	T	N	V	P	S	V	L	P	Q	A	T	A	D	E	I	F	R	A	Q	Y	G	K	I	L	N	L	R	D	L	Q	E	G	I	K	E	L	T	K	R	Y	Q	D	Q	G	Y	V	L	A	N	V	V	G	A	P	Q	V	S	E	N	G	V	V	T	L	Q	V
Template Known Secondary structure				B									S	T	T	S	S				S	S		T								G	G	G		S	S	B																				T	T		T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		180									.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure			.	.	.	.	.	.	.	.																					.
Query SS confidence			.	.	.	.	.	.	.	.																					.
Query Sequence		D	.	.	.	.	.	.	.	.	I	D	Y	N	S	G	E	R	Y	R	F	G	H	V	T	F	E	G	S	Q	.	I	R	D	E	Y	L	Q	N	L	V	P	F	K	E	G	D	E	Y	E	S	K	D	L	A	E	L	N	R	R	L	S	A	T	G	W	F	N	S	V	V	V	A	P	Q	F	D	K	A	R	E
Query Conservation			.	.	.	.	.	.	.	.																					.
Alig confidence			.	.	.	.	.	.	.	.																					.																																																.	.
Template Conservation																																																																															.	.
Template Sequence		A	E	G	V	V	E	N	I	S	V	R	F	R	N	K	E	G	Q	D	V	N	E	Q	G	Q	P	I	R	G	R	T	Q	D	Y	I	I	T	R	E	V	E	L	K	P	G	Q	V	F	N	R	N	T	V	Q	K	D	L	Q	R	V	F	G	T	G	L	F	E	D	V	N	V	S	L	D	P	G	T	.	.	D
Template Known Secondary structure					B											T	T	S		S	B		T	T	S		B				S	S							T	T					T	T	S	B															T	T	S													S	.	.	S
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.			.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	V	L	P	L	T	G	V	V	S	P	R	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	T	K	V	N	V	V	V	N	V	V	E	R	S
Template Known Secondary structure		T	T	S
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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