Job Description P0ADE4 Confidence 100.00% Date Thu Jan 5 11:20:47 GMT 2012 Rank 2 Aligned Residues 243 % Identity 14% Template c3efcA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein assembly factor yaet; PDBTitle: crystal structure of yaet periplasmic domain Resolution 3.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		R	L	Q	V	E	G	L	S	G	Q	L	E	K	N	V	R	A	Q	L	S	T	I	E	.	S	D	E	V	T	P	D	R	R	F	R	A	R	V	D	D	A	I	R	E	G	L	K	A	L	G	Y	Y	Q	P	T	I	E	F	D	L	R	P	P	P	K	K	G	R	Q	V	L	I	A	K	V	T	P	G	V	P
Query Conservation																									.
Alig confidence																									.																																						.
Template Conservation																																																															.
Template Sequence		S	I	T	F	S	G	N	K	S	V	K	D	D	M	L	K	Q	N	L	E	A	S	G	V	R	V	G	E	S	L	D	R	T	T	I	A	D	I	E	K	G	L	E	D	F	Y	Y	S	V	G	K	Y	S	A	S	V	K	A	V	V	T	.	P	L	P	R	N	R	V	D	L	K	L	V	F	Q	E	G	V	S
Template Known Secondary structure							S		T	T	S													T			S	S	S				G	G	G														T	T	T			S									.	B		T	T	S
Template Predicted Secondary structure																																																															.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130							.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence		V	L	I	G	G	T	D	V	V	L	R	G	G	A	R	T	D	K	D	Y	L	K	L	L	D	T	R	.	.	.	.	.	.	P	A	I	G	T	V	L	N	Q	G	D	Y	E	N	F	K	K	S	L	T	S	I	A	L	R	K	G	Y	F	D	S	E	F	T	K	A	Q	L	G	I	A	L	G	L	H	K	A
Query Conservation																													.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	I	Q	Q	I	N	I	V	G	N	H	A	F	T	T	D	E	L	I	S	H	F	Q	L	R	D	E	V	P	W	W	N	V	V	G	D	R	K	Y	Q	K	Q	K	L	A	G	D	L	E	T	L	R	S	Y	Y	L	D	R	G	Y	A	R	F	N	I	D	S	T	Q	V	S	L	T	P	D	K	K	G	I
Template Known Secondary structure											S			S	S		T	T	T	T	G	G	G					S	S			S			S		T	T	T																					T	T		T	T												T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																									.																																				.	.	.
Query SS confidence																									.																																				.	.	.
Query Sequence		F	W	D	I	D	Y	N	S	G	E	R	Y	R	F	G	H	V	T	F	E	G	S	Q	.	I	R	D	E	Y	L	Q	N	L	V	P	F	K	E	G	D	E	Y	E	S	K	D	L	A	E	L	N	R	R	L	S	A	T	G	W	.	.	.	F	N	S	V	V	V	A	P	Q	F	D	K	A	R	E	T	K	V
Query Conservation																									.																																				.	.	.
Alig confidence																									.																																				.	.	.
Template Conservation
Template Sequence		Y	V	T	V	N	I	T	E	G	D	Q	Y	K	L	S	G	V	E	V	S	G	N	L	A	G	H	S	A	E	I	E	Q	L	T	K	I	E	P	G	E	L	Y	N	G	T	K	V	T	K	M	E	D	D	I	K	K	L	L	G	R	Y	G	Y	A	Y	P	R	V	Q	S	M	P	E	I	N	D	A	D	K	T
Template Known Secondary structure																					B	S			T	T								T					S	S		B																				T	T		S	S											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	L	T	G	V	V	S	P	R	T	E	N	T	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	L	R	V	N	V	D	A	G	N	R	F	Y	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions