 |
Job Description | P19931 | Confidence | 99.40% | Date | Thu Jan 5 11:37:40 GMT 2012 |
Rank | 109 | Aligned Residues | 113 |
% Identity | 14% | Template | c3uemA_ |
PDB info |
PDB header:chaperone | Chain: A: PDB Molecule:protein disulfide-isomerase; |
PDBTitle: crystal structure of human pdi bb'a' domains
|
Resolution | 2.29 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | |
70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  | . |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | N | D | T | P | F | D | A | L | W | Q | R | M | L | A | R | G | W | T | P | V | S | E | S | R | L | D | D | W | L | T | Q | A | P | D | G | V | V | L | L | S | S | D | P | K | R | T | P | E | V | S | D | N | P | V | M | I | G | E | L | L | R | E | F | P | D | Y | T | . |
W | Q | V | A | I | A | D | L | E | Q | S |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |
|   |
|
|   |   |   |
|   |
|
|   |
|
|   |   |   |   |   |   |   |   | . |   |   |   |
|   |
|
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |
|   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |
|
|   |
|
| . |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |   |   |
|
Template Sequence |   |
S | Q | E | L | P | E | D | W | D | . |
. |
. |
. |
. |
K | Q | P | V | K | V | L | V | G | K | N | F | E | D | V | A | F | D | E | K | K | N | V | F | V | E | F | Y | . |
A | P | W | C | G | H | C | K | Q | L | A | P | I | W | D | K | L | G | E | T | Y | K | D | H | E | N | I | V | I | A | K | M | D | S | T | A | N |
Template Known Secondary structure |   |
|
|
|
|
| T | T | T | T | . | . | . | . | . | T | S | S | S |  |  |  |
| T | T | T |  |  |  |  |  | T |
| T | T |
|  |  |  |  |  |  |  | . |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| S | S |  |  |  |  |  |  |  | T | T | T |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
357 | . | . | 360 | . | . | . | . | . | |
|
|
|
|
. | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | |
. | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | |
|
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | A | I | G | D | R | F | G | V | F | R | F | P | A | T | L | V | F | T | G | G | N | . |
. |
Y | R | G | V | L | N | G | I | H | P | W | A | E | L | I | N | L | M | R | G |
Query Conservation |   |
  |   |
|   |   |   |
|   |
|   |   |   |
|
|
|
|   |
|   |   |
|   | . | . |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
Alig confidence |   |
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  | . | . |   |   |   |   |   |
|   |   |   |
|
|
|   |   |   |   |   |
|   |
|   |   |   |
|   |
|   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |
Template Sequence |   |
E | . |
. |
V | E | A | V | K | V | H | S | F | P | T | L | K | F | F | P | A | S | A | D | R | T | V | I | D | Y | N | G | E | R | T | L | D | G | F | K | K | F | L | E | S |
Template Known Secondary structure |   |
B | . | . |
| S | S |
|
|
|
| S | S | S |  |  |  |  |  |
| S | S | S | S |
|
|
|  |  |
|
| S |
| S | S |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 | . | . |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
431 | |
|
. | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|