Job Description P06960 Confidence 75.02% Date Thu Jan 5 10:59:30 GMT 2012 Rank 259 Aligned Residues 167 % Identity 16% Template c3tozA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from2 listeria monocytogenes in complex with nad. Resolution 2.20 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.								.	.	.	.	.	.	120	.	.	.	.			.	.	.		.	.	130	.
Predicted Secondary structure																																								.														.	.	.	.	.	.	.												.	.				.
Query SS confidence																																								.														.	.	.	.	.	.	.												.	.				.
Query Sequence		F	E	V	A	A	F	D	Q	G	A	R	V	T	Y	L	G	P	S	G	S	Q	I	G	H	K	E	S	I	K	D	T	A	R	V	L	G	R	M	.	Y	D	G	I	Q	Y	R	G	H	G	Q	E	V	.	.	.	.	.	.	.	V	E	T	L	A	Q	Y	A	G	V	P	.	.	V	W	N	.	G	L	T	N
Query Conservation																																								.														.	.	.	.	.	.	.												.	.				.
Alig confidence																							.	.	.	.														.														.	.	.	.	.	.	.												.	.				.
Template Conservation																							.	.	.	.
Template Sequence		H	N	E	A	F	A	K	L	G	L	D	Y	V	Y	L	A	F	E	V	G	D	.	.	.	.	K	E	L	K	D	V	V	Q	G	F	R	A	M	N	L	R	G	W	N	V	S	M	P	N	K	T	N	I	H	K	Y	L	D	K	L	S	P	A	A	E	L	V	G	A	V	N	T	V	V	N	D	D	G	V	L
Template Known Secondary structure										T													.	.	.	.													T	T								T	T	S	T	T	T	G	G	G	G		S										T			S						T	T
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	H	P	T	Q	L	L	A	D	L	M	T	M	Q	E	H	L	P	G	K	A	F	N	E	M	T	L	V	Y	A	G	D	A	R	N	N	M	G	N	S	M	L	E	A	A	A	L	T	G	L	D	L	R	L	L	A	P	K	A	C	W	P	E	E	S	L	V	A	E	C	S	A	L	A	E	K	H	G	G
Query Conservation
Alig confidence																					.	.														.	.
Template Conservation																					.	.														.	.
Template Sequence		T	G	H	I	T	D	G	T	G	Y	M	R	A	L	K	E	A	G	H	.	.	D	I	I	G	K	K	M	T	I	C	G	A	G	.	.	G	A	A	T	A	I	C	I	Q	A	A	L	D	G	V	K	E	I	S	I	F	N	R	K	D	D	F	Y	A	N	A	E	K	T	V	E	K	I	N	S	K	T	D	C
Template Known Secondary structure																		T	T		.	.			T	T	S								S	.	.														T										S	S	T	T															S	S
Template Predicted Secondary structure																					.	.														.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		212	.	.	.	.	.						.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.
Query SS confidence								.	.	.	.	.
Query Sequence		K	I	T	L	T	E	.	.	.	.	.	D	V	A	A	G	V	K	G	A	D	F	I	Y	T	D	V	W	V	S	M
Query Conservation								.	.	.	.	.
Alig confidence								.	.	.	.	.
Template Conservation
Template Sequence		K	A	Q	L	F	D	I	E	D	H	E	Q	L	R	K	E	I	A	E	S	V	I	F	T	N	A	T	G	V	G	M
Template Known Secondary structure								T	T											T		S						S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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