Job Description P06960 Confidence 40.05% Date Thu Jan 5 10:59:30 GMT 2012 Rank 410 Aligned Residues 162 % Identity 13% Template c3sajB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 1; PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain Resolution 2.50 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																			.	.																											.	.
Query SS confidence																																			.	.																											.	.
Query Sequence		N	I	A	L	I	F	E	K	D	S	T	R	T	R	C	S	F	E	V	A	A	F	D	Q	G	A	R	V	T	Y	L	G	P	.	.	S	G	S	Q	I	G	H	K	E	S	I	K	D	T	A	R	V	L	G	R	M	Y	D	G	I	Q	.	.	Y	R	G	H	G	Q	E	V	V	E	T	L	A	Q	Y	A	G
Query Conservation																																			.	.																											.	.
Alig confidence																																			.	.																											.	.
Template Conservation
Template Sequence		Q	I	G	G	L	F	P	N	Q	Q	S	Q	E	H	A	A	F	R	F	A	L	S	Q	L	T	E	P	P	K	L	L	P	Q	I	D	I	V	N	I	S	D	S	F	E	M	T	Y	R	F	C	S	Q	F	S	K	G	V	Y	A	I	F	G	F	Y	E	R	R	T	V	N	M	L	T	S	F	C	G	A	L	H
Template Known Secondary structure								S	S	S	S													T			S	S	S											T	T																T		S								T	T	T												T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		123	.	.	.	.		.	.	130	.	.	.											.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure							.							.	.	.	.	.	.	.	.	.	.
Query SS confidence							.							.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	V	W	N	.	G	L	T	N	E	F	.	.	.	.	.	.	.	.	.	.	H	P	T	Q	L	L	A	D	L	M	T	M	Q	E	H	L	P	G	K	A	F	N	E	M	T	L	V	Y	A	G	D	A	R	N	N	M	G	N	S	M	L	E	A	A	A	L	T	G	L	D	L	R	L	L	A	P	K	A
Query Conservation							.							.	.	.	.	.	.	.	.	.	.
Alig confidence							.							.	.	.	.	.	.	.	.	.	.											.	.	.					.	.	.																																			.	.
Template Conservation																																		.	.	.					.	.	.																																			.	.
Template Sequence		V	C	F	I	T	P	S	F	P	V	D	T	S	N	Q	F	V	L	Q	L	R	P	E	L	Q	E	A	L	I	S	I	I	.	.	.	D	H	Y	K	.	.	.	W	Q	T	F	V	Y	I	Y	D	A	D	R	G	L	S	V	L	Q	R	V	L	D	T	A	A	E	K	N	W	Q	V	T	A	V	.	.	N	I
Template Known Secondary structure								S				S	S			T	T					S												.	.	.				T	.	.	.														T	T													T							.	.		T
Template Predicted Secondary structure																																		.	.	.					.	.	.																																			.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	W	P	E	E	S	L	V	A	E	C	S	A	L	A	E	K	H	G	G	K	I	T	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	T	T	E	E	G	Y	R	M	L	F	Q	D	L	E	K	K	K	E	R	L	V	V	V
Template Known Secondary structure		T	T																S	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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