Job Description P06960 Confidence 43.29% Date Thu Jan 5 10:59:30 GMT 2012 Rank 398 Aligned Residues 173 % Identity 11% Template c3o8qB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase i alpha; PDBTitle: 1.45 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae Resolution 1.45 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.											.	.	.
Predicted Secondary structure																																															.																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.																						.	.	.	.	.	.	.	.	.	.
Query Sequence		S	T	R	T	R	C	S	F	E	V	A	A	F	D	Q	G	A	R	V	T	Y	L	G	P	S	G	S	Q	I	G	H	K	E	S	I	K	D	T	A	R	V	L	G	R	M	.	Y	D	G	I	Q	Y	R	G	H	G	Q	E	V	V	E	T	L	A	Q	Y	A	.	.	.	.	.	.	.	.	.	.	G	V	P
Query Conservation																																															.																						.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.														.																						.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		H	S	K	S	P	F	I	H	T	L	F	A	R	Q	T	Q	Q	S	M	I	Y	T	A	Q	C	V	P	V	.	.	.	.	D	G	F	T	E	A	A	K	H	F	F	A	Q	G	G	R	G	C	N	V	T	V	P	F	K	E	E	A	Y	R	F	A	D	R	L	T	E	R	A	R	L	A	G	A	V	N	T	L
Template Known Secondary structure		T															T												T	.	.	.	.	T												T	T								T	T										S										T			S
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		125	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure								.																																																					.
Query SS confidence								.																																																					.
Query Sequence		V	W	N	G	L	T	.	N	E	F	H	P	T	Q	L	L	A	D	L	M	T	M	Q	E	H	L	P	G	K	A	F	N	E	M	T	L	V	Y	A	G	D	A	R	N	N	M	G	N	S	M	L	E	A	A	A	L	T	G	L	.	D	L	R	L	L	A	P	K	A	C	W	P	E	E	S	L	V	A	E	C
Query Conservation								.																																																					.
Alig confidence								.																					.	.														.	.																.									.	.	.	.	.	.	.	.
Template Conservation																													.	.														.	.																									.	.	.	.	.	.	.	.
Template Sequence		K	K	L	D	D	G	E	I	L	G	D	N	T	D	G	E	G	L	V	Q	D	L	L	A	Q	Q	V	.	.	L	L	K	G	A	T	I	L	L	I	G	A	G	.	.	G	A	A	R	G	V	L	K	P	L	L	D	Q	Q	P	A	S	I	T	V	T	N	R	T	.	.	.	.	.	.	.	.	F	A	K	A
Template Known Secondary structure					T	T	S																			T	T		.	.			T	T									S	.	.												T	T			S							S	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.														.	.																									.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.									.	.	.	160
		203	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		S	A	L	A	E	K	.	H	G	G	K	I	T	L	T	E	D	V	A	A	G	V	K	G	A	D	F	I	Y	T	D	V	W	V	S	M	G	E	A	K	E	K	W
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		E	Q	L	A	E	L	V	A	A	Y	G	E	V	K	A	Q	A	F	E	Q	L	K	Q	S	Y	D	V	I	I	N	S	T	S	G	E	L	P	A	I	D	P	V	I
Template Known Secondary structure								T	G	G	G	S							G	G	G			S			S															G	G	G
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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