Job Description P06960 Confidence 69.55% Date Thu Jan 5 10:59:30 GMT 2012 Rank 280 Aligned Residues 158 % Identity 9% Template c3donA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from staphylococcus2 epidermidis Resolution 2.10 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.											.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																								.																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.																						.	.	.	.	.	.	.	.	.	.
Query Sequence		F	E	V	A	A	F	D	Q	G	A	R	V	T	Y	L	G	P	S	G	S	Q	I	G	H	K	E	S	I	K	D	T	A	R	V	L	G	R	M	.	Y	D	G	I	Q	Y	R	G	H	G	Q	E	V	V	E	T	L	A	Q	Y	A	.	.	.	.	.	.	.	.	.	.	G	V	P	V	W	N	G	L	T	N
Query Conservation																																								.																						.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.														.																						.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.
Template Sequence		H	H	A	N	F	Q	S	L	N	L	E	N	T	Y	E	A	I	N	V	P	V	.	.	.	.	N	Q	F	Q	D	I	K	K	I	I	S	E	K	S	I	D	G	F	N	V	T	I	P	H	K	E	R	I	I	P	Y	L	D	D	I	N	E	Q	A	K	S	V	G	A	V	N	T	V	L	V	K	D	G	K	W
Template Known Secondary structure									T	T												G	.	.	.	.	G	G	G	G	G								T	T		S						T	T		T	T	T	T	G	G	G		S										T									T	T
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	H	P	T	Q	L	L	A	D	L	M	T	M	Q	E	H	L	P	G	K	A	F	N	E	M	T	L	V	Y	A	G	D	A	R	N	N	M	G	N	S	M	L	E	A	A	A	L	T	G	L	D	L	R	L	L	A	P	K	A	C	W	P	E	E	S	L	V	A	E	C	S	A	L	A	E	K	H	G	G
Query Conservation
Alig confidence																					.	.														.	.																																.	.	.	.	.	.	.	.	.
Template Conservation																					.	.														.	.																																.	.	.	.	.	.	.	.	.
Template Sequence		I	G	Y	N	T	D	G	I	G	Y	V	N	G	L	K	Q	I	Y	E	.	.	G	I	E	D	A	Y	I	L	I	L	G	A	G	.	.	G	A	S	K	G	I	A	N	E	L	Y	K	I	V	R	P	T	L	T	V	A	N	R	T	M	S	R	F	N	N	W	.	.	.	.	.	.	.	.	.	S	L	N	I
Template Known Secondary structure																			S	T	.	.	T	G	G	G									S	.	.												T	T			S							S		G	G	G	G	T	T		.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																					.	.														.	.																																.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.										.	.	160	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	T	L	T	E	D	V	A	A	G	V	K	G	A	D	F	I	Y	T	D	V	W	V	S	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	K	I	N	L	S	H	A	E	S	H	L	D	E	F	D	I	I	I	N	T	T	P	D	S	V
Template Known Secondary structure												T	G	G	G		S										S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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