Job Description P06960 Confidence 55.47% Date Thu Jan 5 10:59:30 GMT 2012 Rank 340 Aligned Residues 159 % Identity 12% Template c1p74B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe) from2 haemophilus influenzae Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.								.	.	120	.	.	.	.			.	.	.		.	.	130	.
Predicted Secondary structure																																								.																		.	.	.	.	.	.	.								.	.				.
Query SS confidence																																								.																		.	.	.	.	.	.	.								.	.				.
Query Sequence		F	E	V	A	A	F	D	Q	G	A	R	V	T	Y	L	G	P	S	G	S	Q	I	G	H	K	E	S	I	K	D	T	A	R	V	L	G	R	M	.	Y	D	G	I	Q	Y	R	G	H	G	Q	E	V	V	E	T	L	.	.	.	.	.	.	.	A	Q	Y	A	G	V	P	.	.	V	W	N	.	G	L	T	N
Query Conservation																																								.																		.	.	.	.	.	.	.								.	.				.
Alig confidence																							.	.	.	.														.																		.	.	.	.	.	.	.								.	.				.
Template Conservation																							.	.	.	.
Template Sequence		Q	N	K	L	A	A	Q	T	H	Q	T	M	E	Y	I	A	K	L	G	D	L	.	.	.	.	D	A	F	E	Q	Q	L	L	A	F	F	E	E	G	A	K	G	C	N	I	T	S	P	F	K	E	R	A	Y	Q	L	A	D	E	Y	S	Q	R	A	K	L	A	E	A	C	N	T	L	K	K	L	D	D	G	K
Template Known Secondary structure									T	T												T	.	.	.	.	T	T											T	T								T	T							T	T		S										T			S						S	S	S
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
			132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	F	H	P	T	Q	L	L	A	D	L	M	T	M	Q	E	H	L	P	G	K	A	F	N	E	M	T	L	V	Y	A	G	D	A	R	N	N	M	G	N	S	M	L	E	A	A	A	L	T	G	L	D	L	R	L	L	A	P	K	A	C	W	P	E	E	S	L	V	A	E	C	S	A	L	A	E	K	H	G
Query Conservation		.
Alig confidence		.																				.	.														.	.																									.	.	.	.	.	.	.	.
Template Conservation																						.	.														.	.																									.	.	.	.	.	.	.	.
Template Sequence		L	Y	A	D	N	T	D	G	I	G	L	V	T	D	L	Q	R	L	N	W	.	.	L	R	P	N	Q	H	V	L	I	L	G	A	G	.	.	G	A	T	K	G	V	L	L	P	L	L	Q	A	Q	Q	N	I	V	L	A	N	R	T	F	.	.	.	.	.	.	.	.	S	K	T	K	E	L	A	E	R	F	Q
Template Known Secondary structure																			T	T		.	.			T	T								S	S	.	.	T	T	T	T	T	T							T	T								S	S		.	.	.	.	.	.	.	.											G
Template Predicted Secondary structure																						.	.														.	.																									.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.									.	.	.	.	.	.	.	160	.	.	.
		211			.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		G	.	.	K	I	T	L	T	E	D	V	A	A	G	V	K	G	A	D	F	I	Y	T	D	V	W	V	S	M
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		P	Y	G	N	I	Q	A	V	S	M	D	S	I	P	L	Q	T	Y	D	L	V	I	N	A	T	S	A	A	S
Template Known Secondary structure		G	G	S							G	G	G				S		B	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions