Job Description P06960 Confidence 87.92% Date Thu Jan 5 10:59:30 GMT 2012 Rank 188 Aligned Residues 172 % Identity 15% Template c1nvtA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5'-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe or2 mj1084) in complex with nadp+ Resolution 2.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.								.	.	.	.	.	.	120	.	.	.	.			.
Predicted Secondary structure																																															.														.	.	.	.	.	.	.												.	.
Query SS confidence																																															.														.	.	.	.	.	.	.												.	.
Query Sequence		S	T	R	T	R	C	S	F	E	V	A	A	F	D	Q	G	A	R	V	T	Y	L	G	P	S	G	S	Q	I	G	H	K	E	S	I	K	D	T	A	R	V	L	G	R	M	.	Y	D	G	I	Q	Y	R	G	H	G	Q	E	V	.	.	.	.	.	.	.	V	E	T	L	A	Q	Y	A	G	V	P	.	.	V
Query Conservation																																															.														.	.	.	.	.	.	.												.	.
Alig confidence																														.	.	.	.														.														.	.	.	.	.	.	.												.	.
Template Conservation																														.	.	.	.
Template Sequence		H	S	F	S	P	I	M	H	N	A	A	F	K	D	K	G	L	N	Y	V	Y	V	A	F	D	V	L	P	.	.	.	.	E	N	L	K	Y	V	I	D	G	A	K	A	L	G	I	V	G	F	N	V	T	I	P	H	K	I	E	I	M	K	Y	L	D	E	I	D	K	D	A	Q	L	I	G	A	V	N	T	I
Template Known Secondary structure		T		S												T	T												G	.	.	.	.	G	G	G	G	G									T								T	T	S	T	T	G	G	G	G	G		S										T
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		126	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		W	N	.	G	L	T	N	E	F	H	P	T	Q	L	L	A	D	L	M	T	M	Q	E	H	L	P	G	K	A	F	N	E	M	T	L	V	Y	A	G	D	A	R	N	N	M	G	N	S	M	L	E	A	A	A	L	T	G	L	D	L	R	L	L	A	P	K	A	C	W	P	E	E	S	L	V	A	E	C	S	A
Query Conservation				.
Alig confidence				.																								.	.														.	.															.							.
Template Conservation																												.	.														.	.															.							.
Template Sequence		K	I	E	D	G	K	A	I	G	Y	N	T	D	G	I	G	A	R	M	A	L	E	E	E	I	G	.	.	R	V	K	D	K	N	I	V	I	Y	G	A	G	.	.	G	A	A	R	A	V	A	F	E	L	A	K	D	N	.	N	I	I	I	A	N	.	R	T	V	E	K	A	E	A	L	A	K	E	I	A	E
Template Known Secondary structure					T	T																						.	.				S									S	.	.											T	S	S	S	.							.	S	S
Template Predicted Secondary structure																												.	.														.	.															.							.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	K	H	G	G	K	I	T	L	T	E	D	V	A	A	G	V	K	G	A	D	F	I	Y	T	D	V	W	V	S	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	N	K	K	F	G	E	E	V	K	F	S	G	L	D	V	D	L	D	G	V	D	I	I	I	N	A	T	P	I	G	M
Template Known Secondary structure				T												T	T				T	T								S		T	T
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions