Job Description P06960 Confidence 100.00% Date Thu Jan 5 10:59:30 GMT 2012 Rank 8 Aligned Residues 303 % Identity 27% Template c1ml4A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate transcarbamoylase; PDBTitle: the pala-liganded aspartate transcarbamoylase catalytic subunit from2 pyrococcus abyssi Resolution 1.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		D	L	Y	K	K	H	F	L	K	L	L	D	F	T	P	A	Q	F	T	S	L	L	T	L	A	A	Q	L	K	A	D	K	K	N	G	K	E	V	Q	K	L	T	G	K	N	I	A	L	I	F	E	K	D	S	T	R	T	R	C	S	F	E	V	A	A	F	D	Q	G	A	R	V	T	Y	L	.	G	P	S	G
Query Conservation																																																																													.
Alig confidence																																																																													.
Template Conservation
Template Sequence		D	W	K	G	R	D	V	I	S	I	R	D	F	S	K	E	D	I	E	T	V	L	A	T	A	E	R	L	E	R	E	L	K	E	K	G	Q	L	E	Y	A	K	G	K	I	L	A	T	L	F	F	E	P	S	T	R	T	R	L	S	F	E	S	A	M	H	R	L	G	G	A	V	I	G	F	A	E	A	S	T
Template Known Secondary structure				T	T			B			G	G	G																								S	S			T	T	T	T								S	S			S													T	T							S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		S	Q	I	G	H	K	E	S	I	K	D	T	A	R	V	L	G	R	M	Y	D	G	I	Q	Y	R	G	H	G	Q	E	V	V	E	T	L	A	Q	Y	A	G	V	P	V	W	N	.	G	L	T	N	E	F	H	P	T	Q	L	L	A	D	L	M	T	M	Q	E	H	L	P	G	K	A	F	N	E	M	T	L	V
Query Conservation																																																.
Alig confidence																																																.																								.	.
Template Conservation																																																																								.	.
Template Sequence		S	S	V	K	K	G	E	S	L	R	D	T	I	K	T	V	E	Q	Y	C	D	V	I	V	I	R	H	P	K	E	G	A	A	R	L	A	A	E	V	A	E	V	P	V	I	N	A	G	D	G	S	N	Q	H	P	T	Q	T	L	L	D	L	Y	T	I	K	K	E	F	G	.	.	R	I	D	G	L	K	I	G
Template Known Secondary structure		S	G	G	G	G	T											T	T	T		S							S	S	T	T								T		S	S								T	T	S																	S	S	.	.		S	S	S
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.
		161	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		Y	A	G	D	A	R	.	N	N	M	G	N	S	M	L	E	A	A	A	L	T	G	L	D	L	R	L	L	A	P	K	A	C	W	P	E	E	S	L	V	A	E	C	S	A	L	A	E	K	H	G	G	K	I	T	L	T	E	D	V	A	A	G	V	K	G	A	D	F	I	Y	T	D	V	W	V	S	M	G	E
Query Conservation								.
Alig confidence								.																																							.	.	.	.
Template Conservation																																															.	.	.	.
Template Sequence		L	L	G	D	L	K	Y	G	R	T	V	H	S	L	A	E	A	L	T	F	Y	D	V	E	L	Y	L	I	S	P	E	L	L	R	M	P	R	H	I	V	E	E	L	R	E	.	.	.	.	K	G	M	K	V	V	E	T	T	T	L	E	D	V	I	G	K	L	D	V	L	Y	V	T	R	I	Q	K	E	R	F
Template Known Secondary structure				S		T	T	T											G	G	G	S										G	G	G													.	.	.	.	T	T							S		T					T	T		S									G	G	G	S
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	E	K	W	A	E	R	I	A	L	L	R	G	Y	Q	V	N	A	Q	M	M	A	L	T	D	N	P	N	V	K	F	L	H	C	L	P	A	F	H	D	D	Q	T	T	L	G	K	Q	M	A	K	E	F	D	L	H	G	G	M	E	V	T	D	E	V	F	E	S	A	A	S	I	V	F	D	Q	A	E	N
Query Conservation
Alig confidence					.	.																					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.																					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	E	.	.	Q	E	Y	L	K	V	K	G	S	Y	Q	V	N	L	K	V	L	E	K	A	.	K	D	E	L	R	I	M	H	P	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	D	E	I	H	P	E	V	D	N	T	K	H	A	I	Y	F	R	Q	V	F	N
Template Known Secondary structure		S	S		.	.					T	T	T	T				B		T	T	G	G	G	G	S	.		T	T							S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	B		G	G	G	G	G	S	T	T	B								T
Template Predicted Secondary structure					.	.																					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.																					270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	H	T	I	K	A	V	M	M	A	T	L	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	P	V	R	M	A	L	L	A	L	V	L	G	V
Template Known Secondary structure															T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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