Job Description P06960 Confidence 100.00% Date Thu Jan 5 10:59:30 GMT 2012 Rank 19 Aligned Residues 288 % Identity 30% Template c1js1Z_ PDB info PDB header:transferase Chain: Z: PDB Molecule:transcarbamylase; PDBTitle: crystal structure of a new transcarbamylase from the2 anaerobic bacterium bacteroides fragilis at 2.0 a3 resolution Resolution 2.00 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		K	H	F	L	K	L	L	D	F	T	P	A	Q	F	T	S	L	L	T	L	A	A	Q	L	K	A	D	K	K	N	G	K	E	V	Q	K	L	T	G	K	N	I	A	L	I	F	E	K	D	S	T	R	T	R	C	S	F	E	V	A	A	F	D	Q	G	A	R	V	T	Y	L	G	P	S	G	S	Q	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence												.	.															.	.																																																		.	.	.
Template Conservation												.	.															.	.
Template Sequence		K	K	F	T	C	V	Q	D	I	G	.	.	D	L	K	S	A	L	A	E	S	F	E	I	K	K	.	.	D	R	F	K	Y	V	E	L	G	R	N	K	T	L	L	M	I	F	F	N	S	S	L	R	T	R	L	S	T	Q	K	A	A	L	N	L	G	M	N	V	I	V	L	D	I	N	Q	G	A	W	K	L
Template Known Secondary structure				B	S	S	G	G	G	G		.	.															.	.	S	T	T	T	T	T	T	T	T	T	T								S	S			S													T	T										T	T	S
Template Predicted Secondary structure												.	.															.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
											84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.											.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	I	G	H	K	E	S	I	K	D	T	A	R	V	L	G	R	M	Y	D	G	I	Q	Y	R	G	H	G	Q	E	.	.	.	.	.	.	.	.	.	.	V	V	E	T	L	A	Q	Y	A	G	V	P	V	W	N	G	L	T	N	E	F	H	P	T	Q	L	L	A	D	L	M	T
Query Conservation		.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	E	R	G	V	I	M	D	G	D	K	P	E	H	L	L	E	A	I	P	V	M	G	C	Y	C	D	I	I	G	V	R	S	F	A	R	F	E	N	R	E	Y	D	Y	N	E	V	I	I	N	Q	F	I	Q	H	S	G	R	P	V	F	S	M	E	A	A	T	R	H	P	L	Q	S	F	A	D	L	I	T
Template Known Secondary structure				S	S	S					S	S														T	T		S										S	S							T	T										S	S	S					S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure														.											.	.	.
Query SS confidence														.											.	.	.
Query Sequence		M	Q	E	H	L	P	G	K	A	F	N	E	.	M	T	L	V	Y	A	G	D	A	R	.	.	.	N	N	M	G	N	S	M	L	E	A	A	A	L	T	G	L	D	L	R	L	L	A	P	K	A	C	W	P	E	E	S	L	V	A	E	C	S	A	L	A	E	K	H	G	G	K	I	T	L	T	E	D	V	A
Query Conservation														.											.	.	.
Alig confidence								.	.					.											.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	E	E	Y	K	K	.	.	T	A	R	P	K	V	V	M	T	W	A	P	H	P	R	P	L	P	Q	A	V	P	N	S	F	A	E	W	M	N	A	T	D	Y	E	F	V	I	T	H	P	E	G	Y	E	L	D	P	K	F	V	.	.	.	.	.	.	.	.	.	.	.	G	N	A	R	V	E	Y	D	Q	M
Template Known Secondary structure							S	.	.	S	S	S											S	S				S												T	S	S	S								T	T									.	.	.	.	.	.	.	.	.	.	.	T	T					S
Template Predicted Secondary structure								.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.												.	.	.	.	.	220	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	V	K	G	A	D	F	I	Y	T	D	V	W	V	S	M	G	E	A	K	E	K	W	A	E	R	I	A	L	L	R	G	Y	Q	V	N	A	Q	M	M	A	L	T	D	N	P	N	V	K	F	L	H	C	L	P	A	F	H	D	D	Q	T	T	L	G	K	Q	M	A	K	E	F	D	L	H	G	G	M	E
Query Conservation
Alig confidence																								.	.																			.		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.																			.		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	F	E	G	A	D	F	I	Y	A	K	N	W	A	A	Y	T	G	D	N	Y	.	.	G	Q	I	L	S	T	D	R	N	W	T	V	G	D	R	Q	M	A	.	V	.	T	N	N	A	Y	F	M	H	C	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	R	N	M	I
Template Known Secondary structure					T	T		S											S	G	G	G	T	.	.	T							T	T	S	S	B						T	.	T	.	S	S	S							S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B	T	T	T
Template Predicted Secondary structure																								.	.																			.		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.		.	.	.	.	270	.	.	.	.	.	.																			.	.	.	280	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	D	E	V	F	E	S	A	A	S	I	V	F	D	Q	A	E	N	R	M	H	T	I	K	A	V	M	M	A	T	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	D	D	V	I	E	S	P	Q	S	I	V	I	P	E	A	A	N	R	E	I	S	A	T	V	V	L	K	R	L	L	E
Template Known Secondary structure		B						T	S	T	T	B
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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