Job Description P06960 Confidence 46.94% Date Thu Jan 5 10:59:30 GMT 2012 Rank 384 Aligned Residues 200 % Identity 15% Template c1bvuF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: glutamate dehydrogenase from thermococcus litoralis Resolution 2.50 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.								.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.
Query Sequence		D	F	T	P	A	Q	F	T	S	L	L	T	L	A	A	Q	L	K	A	D	K	K	N	G	K	E	V	Q	K	L	T	G	K	N	I	A	L	I	F	E	K	D	S	T	.	.	.	.	.	.	.	R	T	R	C	S	F	E	V	A	A	F	D	Q	G	A	R	V	T	Y	L	G	P	S	G	S	Q	I	G	H
Query Conservation																																														.	.	.	.	.	.	.
Alig confidence											.													.	.	.	.	.																		.	.	.	.	.	.	.																													.
Template Conservation											.													.	.	.	.	.																																																					.
Template Sequence		E	E	T	L	S	T	V	K	A	.	L	A	A	W	M	T	W	K	T	A	V	M	.	.	.	.	.	D	L	P	Y	G	G	G	K	G	G	V	I	C	N	P	K	E	M	S	D	R	E	K	E	R	L	A	R	G	Y	V	R	A	I	Y	D	V	I	S	P	Y	T	D	I	P	A	P	D	V	Y	T	N	.
Template Known Secondary structure		T									.													.	.	.	.	.	T		S										S		G	G	G																	S	G	G	G		B	T	T	T					B		T	T			.
Template Predicted Secondary structure											.													.	.	.	.	.																																																					.
Template SS confidence
		76	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.						.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		K	E	S	I	K	D	T	A	R	V	L	G	R	M	Y	D	G	I	Q	Y	R	G	H	G	Q	E	V	V	E	T	L	A	Q	Y	A	G	V	P	V	W	N	G	L	T	N	E	F	H	P	T	Q	L	L	A	D	L	M	T	M	Q	E	H	L	P	.	.	G	K	A	F	N	E	M	T	L	V	Y	A	G	D
Query Conservation																																																																		.	.
Alig confidence		.	.	.																									.	.	.	.	.	.																																.	.														.
Template Conservation		.	.	.																									.	.	.	.	.	.																																															.
Template Sequence		.	.	.	P	Q	I	M	A	W	M	M	D	E	Y	E	T	I	S	R	R	K	D	P	S	F	G	V	.	.	.	.	.	.	I	T	G	K	P	P	S	V	G	G	I	V	A	R	M	D	A	T	A	R	G	A	S	Y	T	V	R	E	A	A	K	A	L	G	M	D	L	K	G	K	T	I	A	I	Q	G	.
Template Known Secondary structure		.	.	.																T	T	S	S		G	G	G	S	.	.	.	.	.	.			S			G	G	G	T			S	S	T	T	T																	T	T				T	T								.
Template Predicted Secondary structure		.	.	.																									.	.	.	.	.	.																																															.
Template SS confidence
					149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.							.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.									.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																.								.	.	.	.	.	.	.	.
Query SS confidence																.								.	.	.	.	.	.	.	.
Query Sequence		A	R	N	N	M	G	N	S	M	L	E	A	A	A	.	L	T	G	L	D	L	R	.	.	.	.	.	.	.	.	L	L	A	P	K	A	C	W	P	E	E	S	L	V	A	E	C	S	A	L	A	E	K	H	G	G	K	I	T	L	T	E	D	V	A	A	G	V	K	G	A	D	F	I	Y	T
Query Conservation																.								.	.	.	.	.	.	.	.
Alig confidence			.													.								.	.	.	.	.	.	.	.
Template Conservation			.
Template Sequence		Y	.	G	N	A	G	Y	Y	M	A	K	I	M	S	E	E	Y	G	M	K	V	V	A	V	S	D	T	K	G	G	I	Y	N	P	D	G	L	N	A	D	E	V	L	A	W	K	K	K	T	G	S	V	K	D	F	P	G	A	T	N	I	T	N	E	E	L	L	E	L	E	V	D	V	L	A	P
Template Known Secondary structure			.	S													T	T										T	T						T	T															S	S	S	T	T		T	T	S										T	S			S
Template Predicted Secondary structure			.
Template SS confidence
		219		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions