Job Description P16689 Confidence 100.00% Date Thu Jan 5 11:35:39 GMT 2012 Rank 12 Aligned Residues 352 % Identity 19% Template c3ooqC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:amidohydrolase; PDBTitle: crystal structure of amidohydrolase from thermotoga maritima msb8 Resolution 2.06 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure															.																						.																																							.	.	.	.	.	.
Query SS confidence															.																						.																																							.	.	.	.	.	.
Query Sequence		M	I	I	N	N	V	K	L	V	L	E	N	E	.	V	V	S	G	S	L	E	V	Q	N	G	E	I	R	A	F	A	E	S	Q	S	.	R	L	P	E	A	M	D	G	E	G	G	W	L	L	P	G	L	I	E	L	H	T	D	N	L	D	K	F	F	T	P	R	P	K	V	D	W	P	.	.	.	.	.	.
Query Conservation															.																						.																																							.	.	.	.	.	.
Alig confidence															.																						.																																							.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	F	K	N	A	T	V	F	P	I	T	S	R	P	F	K	G	D	V	L	V	S	N	G	K	V	E	K	V	G	E	N	I	E	D	P	D	A	E	I	V	D	L	T	G	K	F	L	F	P	G	F	V	D	A	H	S	H	I	G	L	F	E	E	G	V	G	Y	Y	Y	S	D	G	N	E	A	T	D	P
Template Known Secondary structure												S	S	S											T	T							S					S	S	S						T	T														T	T	T	S		T	T	S		G	G	G			S			T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
											73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	A	H	S	A	M	S	S	H	D	A	L	M	V	A	S	G	I	T	T	V	L	D	A	V	A	I	G	D	V	R	D	G	G	D	R	L	E	N	L	E	K	M	I	N	A	I	E	E	T	Q	K	R	G	V	N	R	A	E	H	R	L	H	L	R	C	E	L	P	H	H	T
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	P	H	V	K	A	L	D	G	F	N	P	Q	D	P	A	I	E	R	A	L	A	G	G	V	T	S	V	X	I	V	P	G	S	A	N	P	V	G	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	G	S	V	I	K	F	R	S	I	I	V	E	E	C	I	V	K	D	P	A	G	L	K	X	A	F
Template Known Secondary structure		B		T	T		B	G	G	G	G			T	T										T	T										S	S	S	S					.	.	.	.	.	.	.	.	.	.	.	.						S			S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.													.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	P	L	F	E	K	L	V	Q	R	E	P	V	T	L	V	S	L	M	D	H	S	P	G	Q	R	Q	F	A	N	R	E	K	Y	R	E	Y	Y	Q	G	K	Y	S	L	T	D	A	Q	M	Q	Q	Y	E	E	E	Q	L	A	L	A	A	R	W	S	Q	P	N	R	E	S	I	A	A	L	C	R	A	R	K
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	N	P	K	R	V	Y	G	E	R	K	Q	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	R	X	G	T	A	G	V	I	R	D	Y	F	T	K	V	K	N	Y	X	K	K	K	E	L	A	Q	K	E	G	K	E	F	T	E	T	D	L	K	X	E	V	G	E	X	V	L	R	K	K
Template Known Secondary structure		S										T	T		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S																												T	T																		T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.															170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.						.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.																																										.	.	.
Query SS confidence																					.	.	.	.	.																																										.	.	.
Query Sequence		I	A	L	A	S	H	D	D	A	T	H	A	H	V	A	E	S	H	Q	.	.	.	.	.	L	G	S	V	I	A	E	F	P	T	T	F	E	A	A	E	A	S	R	K	H	G	M	N	V	L	M	G	A	P	N	I	V	R	G	G	S	H	S	G	N	.	.	.	V	A	A	S	E	L	A	Q	L	G	L	L
Query Conservation																					.	.	.	.	.																																										.	.	.
Alig confidence																					.	.	.	.	.																																										.	.	.
Template Conservation
Template Sequence		I	P	A	R	X	H	A	H	R	A	D	D	I	L	T	A	I	R	I	A	E	E	F	G	F	N	L	V	I	E	H	G	T	E	A	Y	K	I	S	K	V	L	A	E	K	K	I	P	V	V	V	G	P	L	L	T	F	R	T	K	L	E	L	K	D	L	T	X	E	T	I	A	K	L	L	K	D	G	V	L
Template Known Secondary structure		S								S															T									T	T	G	G	G	G							T	T									S	S				S	G	G	G	T	T			T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																																																			.															.	.
Query SS confidence																																																			.															.	.
Query Sequence		D	I	L	S	S	D	Y	Y	P	A	S	L	L	D	A	A	F	R	V	A	D	D	Q	S	N	R	F	T	L	P	Q	A	V	K	L	V	T	K	N	P	A	Q	A	L	N	L	Q	D	R	.	G	V	I	G	E	G	K	R	A	D	L	V	L	A	.	.	H	R	K	D	N	H	I	H	I	D	H	V	W	R
Query Conservation																																																			.															.	.
Alig confidence																																																			.															.	.
Template Conservation
Template Sequence		I	A	L	X	C	D	H	P	V	I	P	L	E	F	A	T	V	Q	A	A	T	A	X	R	Y	G	A	K	E	E	D	L	L	K	I	L	T	V	N	P	A	K	I	L	G	L	E	D	R	I	G	S	I	E	P	G	K	D	A	D	L	V	V	W	S	G	H	P	F	D	X	K	S	V	V	E	R	V	Y	I
Template Known Secondary structure							T	T	T	T	S		G	G	G								G	G	G	G	T									T	T	T							T	T		T	T	T	S	S	S			T	T	S	B							S	S		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		373	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	K	R	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	V	E	V	F
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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