Phyre 2 alignment of P16689 with c3msrA

Job Description P16689
Confidence 99.77% Date Thu Jan 5 11:35:39 GMT 2012

Rank 59 Aligned Residues 307

% Identity 13% Template c3msrA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:amidohydrolases; PDBTitle: the crystal structure of an amidohydrolase from mycoplasma synoviae

Resolution 2.16 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	35	.	.	.	.	40	.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.				.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.																							.	.	.
Query SS confidence																.	.	.																							.	.	.
Query Sequence	R	L	P	E	A	M	D	G	E	G	G	W	L	L	P	.	.	.	G	L	I	E	L	H	T	D	N	L	D	K	F	F	T	P	R	P	K	V	D	W	.	.	.	P	A	H	S	A	M	S	S	H	D	A	L	M	V	A	S	G	I	T	T	V	L	D	A	V	A	I	G	D	V	R	D	G	G	D	R	L
Query Conservation																.	.	.																							.	.	.
Alig confidence												.				.	.	.																							.	.	.
Template Conservation												.
Template Sequence	E	N	K	F	A	R	T	V	L	G	D	.	I	P	V	E	K	L	G	I	T	D	C	H	D	H	F	I	K	N	G	G	P	E	V	E	E	H	I	D	F	L	X	L	N	V	D	A	S	I	K	E	F	K	E	F	I	D	R	G	G	S	T	I	V	T	X	D	P	P	N	V	G	R	D	V	L	K	T	L
Template Known Secondary structure								T	T			.			G	G	G										S		B		S	S							G	G	G		B																T	T										T	T	T	T
Template Predicted Secondary structure												.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	N	L	E	K	M	I	N	A	I	E	E	T	Q	K	R	G	V	N	R	A	E	H	R	L	H	L	R	C	E	L	P	H	H	T	T	L	P	L	F	E	K	L	V	Q	R	E	P	V	T	L	V	S	L	M	D	H	S	P	G	Q	R	Q	F	A	N	R	E	K	Y	R	E	Y	Y	Q	G	K	Y	S	L
Query Conservation
Alig confidence																																																																												.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.
Template Sequence	E	I	A	N	A	V	K	N	L	G	G	N	V	I	X	S	T	G	F	H	K	A	K	F	Y	D	K	Y	S	S	W	L	A	V	V	P	T	E	E	I	V	K	X	C	V	A	E	I	E	E	G	X	D	E	Y	N	Y	N	G	P	V	V	K	R	S	K	A	K	A	G	I	I	K	A	G	.	.	.	.	.
Template Known Secondary structure							G	G	G	T												G	G	G	S		T	T	T	S					S															T			B	T	T	T	T	S	S	S				B		S										.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

	189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.									.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.												.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.												.	.	.	.	.	.	.	.
Query Sequence	T	D	A	Q	M	Q	Q	Y	E	E	E	Q	L	A	L	A	A	R	W	S	Q	P	N	R	E	S	I	A	A	L	C	R	A	R	K	I	A	L	A	S	H	D	D	A	T	.	.	.	H	A	H	V	A	E	S	H	Q	L	G	.	.	.	.	.	.	.	.	S	V	I	A	E	F	P	T	T	F	E	A	A
Query Conservation																																														.	.	.												.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.																																				.	.	.												.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	T	G	Y	G	A	I	D	R	L	E	L	K	A	L	E	V	A	A	R	T	S	I	L	T	G	C	P	I	L	V	H	T	Q	L	G	T	X	A	L	E	V	A	K	H	L	I	G	F	G	A	N	P	D	K	I	Q	I	S	H	L	N	K	N	P	D	K	Y	Y	Y	E
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.		B	T	T	B																												G	G	G		S												T			G	G	G						G	G	G	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

	258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.			.	.	.	.	.	300	.	.	.	.	.																	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.											.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.											.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	A	S	R	K	H	G	M	N	V	L	M	G	A	P	N	I	V	R	G	G	S	H	S	G	N	V	.	A	A	S	E	L	A	Q	L	G	L	.	.	L	D	I	L	S	S	D	Y	Y	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	L	D	A	A	F	R	V	A	D	D	Q
Query Conservation																												.											.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.											.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	V	I	K	E	T	G	V	T	L	C	F	D	G	P	D	R	V	K	Y	Y	P	D	S	L	L	A	E	N	I	K	Y	L	V	D	K	G	L	Q	K	H	I	T	L	S	L	D	A	G	R	I	L	Y	Q	R	N	Y	G	L	T	K	G	K	Q	T	F	G	L	A	Y	L	F	D	R	F	L	P	L	L	K
Template Known Secondary structure															T	T		T	T	T																T	T		G	G	G									S	G	G	G	S							T	T						T						T
Template Predicted Secondary structure
Template SS confidence
	226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

	319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	N	R	F	T	L	P	Q	A	V	K	L	V	T	K	N	P	A	Q	A	L	N	L	Q	D	R	G	V	I	G	E	G	K	R	A	D	L	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Q	V	G	V	S	K	E	A	I	F	D	I	L	V	N	N	P	K	R	V	L	A	F	D	E	K	R	N	F	D	P	L	K	V	S	K	E	V	L
Template Known Secondary structure			T											T							T	S									G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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