Phyre 2 alignment of P16689 with c2r8cB

Job Description P16689
Confidence 100.00% Date Thu Jan 5 11:35:39 GMT 2012

Rank 29 Aligned Residues 365

% Identity 17% Template c2r8cB_

PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative amidohydrolase; PDBTitle: crystal structure of uncharacterized protein eaj56179

Resolution 2.31 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.				.
Predicted Secondary structure														.	.	.																			.	.																																									.	.	.
Query SS confidence														.	.	.																			.	.																																									.	.	.
Query Sequence	M	I	I	N	N	V	K	L	V	L	E	N	E	.	.	.	V	V	S	G	S	L	E	V	Q	N	G	E	I	R	A	F	A	E	.	.	S	Q	S	R	L	P	E	A	M	D	G	E	G	G	W	L	L	P	G	L	I	E	L	H	T	D	N	L	D	K	F	F	T	P	R	P	K	V	D	W	.	.	.	P
Query Conservation														.	.	.																			.	.																																									.	.	.
Alig confidence														.	.	.																			.	.																																									.	.	.
Template Conservation
Template Sequence	F	L	F	R	N	G	A	L	L	D	P	D	H	P	D	L	L	Q	G	F	E	I	L	I	E	D	G	F	I	R	E	V	S	D	K	P	I	K	S	S	N	A	H	V	I	D	V	K	G	K	T	I	M	P	G	L	I	D	L	H	V	H	V	V	A	I	E	F	N	L	P	R	V	A	T	L	P	N	V	L
Template Known Secondary structure					S	S					T	T							S							T	T							S	S						S	S						T	T														T	T			S	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	H	S	A	M	S	S	H	D	A	L	M	V	A	S	G	I	T	T	V	L	D	A	V	A	I	G	D	V	R	D	G	G	D	R	L	E	N	L	E	K	M	I	N	A	I	E	E	T	Q	K	R	G	V	N	R	A	E	H	R	L	H	L	R	C	E	L	P	H	H	T	T	L	P	L	F	E	K	L	V
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.
Template Sequence	V	T	L	R	A	V	P	I	M	R	A	M	L	R	R	G	F	T	T	V	R	D	A	G	G	A	G	Y	.	.	.	.	.	.	.	.	.	P	F	K	Q	A	V	E	S	G	L	V	E	G	P	R	L	F	V	S	G	R	A	L	S	Q	T	G	G	H	A	D	P	R	A	R	S	D	Y	M	P	P	D	S
Template Known Secondary structure															T	T								S	S				.	.	.	.	.	.	.	.	.								T	T	S	S										S					T	T	S	T	T						S	S	S				S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.										.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.

	153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	R	E	P	V	T	L	V	S	L	M	D	H	S	P	G	Q	R	Q	F	A	N	R	E	K	Y	R	E	Y	Y	Q	G	K	Y	S	L	T	D	A	Q	M	Q	Q	Y	E	E	E	Q	L	A	L	A	A	R	W	S	Q	P	N	R	E	S	I	A	A	L	C	R	A	R	K	I	A	L	A	S	H	D	D	A
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence	P	G	C	C	V	R	V	G	A	L	G	R	V	A	D	G	V	D	E	V	R	.	.	R	A	V	R	E	E	L	Q	M	G	A	D	Q	I	K	I	M	A	S	G	G	V	P	T	D	P	V	G	V	F	G	Y	S	E	D	E	I	R	A	I	V	A	E	A	Q	G	R	G	T	Y	V	L	A	H	A	Y	T
Template Known Secondary structure				S			T	T								S						.	.									T	T		S	S						B								S	S	S	B		S															T	T									S
Template Predicted Secondary structure																						.	.
Template SS confidence
	155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.																				.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																					.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	H	A	H	V	A	E	S	H	Q	L	G	S	V	I	A	E	F	P	T	.	T	F	E	A	A	E	A	S	R	K	H	G	M	N	V	L	M	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	I	V	R	G	G	S	H	S	G	N	V	A	A	S	E	L	A	Q	L
Query Conservation																					.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	P	A	A	I	A	R	A	V	R	C	G	V	R	T	I	E	H	G	N	L	I	D	D	E	T	A	R	L	V	A	E	H	G	A	Y	V	V	P	T	L	V	T	Y	D	A	L	A	S	E	G	E	K	Y	G	L	P	P	E	S	I	A	K	I	A	D	V	H	G	A	G	L	H	S	I	E	I	M	K	R	A
Template Known Secondary structure										T	T		S						T	T												T	T																S	T	G	G	G	T			T	T	S	S	T	T						T	T											T
Template Predicted Secondary structure
Template SS confidence
	236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

	293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																																					.																					.	.	.	.	.	.	.
Query SS confidence																																																					.																					.	.	.	.	.	.	.
Query Sequence	G	L	L	D	I	L	S	S	D	Y	Y	P	A	S	L	L	D	A	A	F	R	V	A	D	D	Q	S	N	R	F	T	L	P	Q	A	V	K	L	V	T	K	N	P	A	Q	A	L	N	L	Q	D	R	.	G	V	I	G	E	G	K	R	A	D	L	V	L	A	H	R	K	D	N	H	.	.	.	.	.	.	.
Query Conservation																																																					.																					.	.	.	.	.	.	.
Alig confidence																												.																									.																					.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence	G	V	K	M	G	F	G	T	D	L	L	G	E	A	Q	R	L	Q	S	D	E	F	R	I	L	A	E	.	V	L	S	P	A	E	V	I	A	S	A	T	I	V	S	A	E	V	L	G	M	Q	D	K	L	G	R	I	V	P	G	A	H	A	D	V	L	V	V	D	G	N	P	L	K	S	V	D	C	L	L	G
Template Known Secondary structure	T											G	G	G	G	G	G	T	T							T	T	.	T	S									T	T							T	T		B	T	T	B	S	S			T	T	S	B							S	S		T	T	T		G	G	G	S		S
Template Predicted Secondary structure																												.
Template SS confidence
	316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

			365	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure	.	.
Query SS confidence	.	.
Query Sequence	.	.	I	H	I	D	H	V	W	R	Q	G	K	R	V
Query Conservation	.	.
Alig confidence	.	.
Template Conservation
Template Sequence	Q	G	E	H	I	P	L	V	M	K	D	G	R	L	F
Template Known Secondary structure	S	S	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
	395	.	.	.	.	400	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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