Phyre 2 alignment of P16689 with c2qs8A

Job Description P16689
Confidence 100.00% Date Thu Jan 5 11:35:39 GMT 2012

Rank 35 Aligned Residues 365

% Identity 14% Template c2qs8A_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:xaa-pro dipeptidase; PDBTitle: crystal structure of a xaa-pro dipeptidase with bound2 methionine in the active site

Resolution 2.33 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure														.	.	.																			.	.	.
Query SS confidence														.	.	.																			.	.	.
Query Sequence	M	I	I	N	N	V	K	L	V	L	E	N	E	.	.	.	V	V	S	G	S	L	E	V	Q	N	G	E	I	R	A	F	A	E	.	.	.	S	Q	S	R	L	P	E	A	M	D	G	E	G	G	W	L	L	P	G	L	I	E	L	H	T	D	N	L	D	K	F	F	T	P	R	P	K	V	D	W	P	A	H
Query Conservation														.	.	.																			.	.	.
Alig confidence														.	.	.																			.	.	.
Template Conservation
Template Sequence	T	L	I	H	A	G	K	L	I	D	G	K	S	D	Q	V	Q	S	R	I	S	I	V	I	D	G	N	I	I	S	D	I	K	K	G	F	I	S	S	N	D	F	E	D	Y	I	D	L	R	D	H	T	V	L	P	G	L	X	D	X	H	V	H	F	G	Q	E	Y	Q	S	K	A	Q	A	P	I	K	V	E	R
Template Known Secondary structure											S	S		S	S											T	T								S					T	T	S	S																					T	T						T	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
	9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.

	75	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence	S	A	M	S	S	H	D	.	.	.	.	A	L	M	V	A	S	G	I	T	T	V	L	D	A	V	A	I	G	D	V	R	D	G	G	D	R	L	E	N	L	E	K	M	I	N	A	I	E	E	T	Q	K	R	G	V	N	R	A	E	H	R	L	H	L	R	C	E	L	P	H	H	T	T	L	P	L	F	E	K
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.																																																																.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.
Template Sequence	E	X	Q	A	I	L	A	T	Q	H	A	Y	V	T	F	K	S	G	F	T	T	V	R	Q	V	G	D	S	G	L	V	A	I	S	L	R	D	A	I	N	S	G	K	L	A	G	P	R	I	F	A	A	G	K	T	I	A	T	T	G	G	H	A	D	P	T	N	G	K	A	V	D	D	Y	.	.	.	.	.	.
Template Known Secondary structure																	T	T										S	S	S											T	T	S	S										S		B			T	T		T	T		T	T	T	T			G	G	G		.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.
Template SS confidence
	89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.

	151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence	L	V	Q	R	E	P	V	T	L	V	S	L	M	D	H	S	P	G	Q	R	Q	F	A	N	R	E	K	Y	R	E	Y	Y	Q	G	K	Y	S	L	T	D	A	Q	M	Q	Q	Y	E	E	E	Q	L	A	L	A	A	R	W	S	Q	P	N	R	E	S	I	A	A	L	C	R	A	R	K	I	A	L	A	S	H	D
Query Conservation
Alig confidence	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	D	Y	P	V	P	E	Q	G	V	V	N	G	P	Y	E	V	Y	A	A	V	R	Q	R	Y	K	D	G	A	D	G	I	K	I	T	V	T	G	G	V	L	S	V	A	K	S	G	Q	N	P	Q	F	T	Q	E	E	V	D	A	V	V	S	A	A	K	D	Y	G	X	W	V	A	V	H	A
Template Known Secondary structure	.	.	.	.	.	.					G	G	G	T				S															T		S							B			S	S	S	S	S	S		S	S		B		S															T	T
Template Predicted Secondary structure	.	.	.	.	.	.
Template SS confidence
							163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

	231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270																					.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	D	A	T	H	A	H	V	A	E	S	H	Q	L	G	S	V	I	A	E	F	P	T	.	T	F	E	A	A	E	A	S	R	K	H	G	M	N	V	L	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	N	I	V	R	G	G	S	H	S	G	N	V	A	A	S	E	L
Query Conservation																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	H	G	A	E	G	X	K	R	A	I	K	A	G	V	D	S	I	E	H	G	T	F	X	D	L	E	A	X	D	L	X	I	E	N	G	T	Y	Y	V	P	T	I	S	A	G	E	F	V	A	E	K	S	K	I	D	N	F	F	P	E	I	V	R	P	K	A	A	S	V	G	P	Q	I	S	D	T	F	R	K	A
Template Known Secondary structure		S											T		S						T	T													T																	T	T	S	T	T	S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																																								.																					.	.	.	.
Query SS confidence																																																								.																					.	.	.	.
Query Sequence	A	Q	L	G	L	L	D	I	L	S	S	D	Y	Y	P	A	S	L	L	D	A	A	F	R	V	A	D	D	Q	S	N	R	F	T	L	P	Q	A	V	K	L	V	T	K	N	P	A	Q	A	L	N	L	Q	D	R	.	G	V	I	G	E	G	K	R	A	D	L	V	L	A	H	R	K	D	N	H	.	.	.	.
Query Conservation																																																								.																					.	.	.	.
Alig confidence																																																								.																					.	.	.	.
Template Conservation
Template Sequence	Y	E	K	G	V	K	I	A	F	G	T	D	A	G	V	Q	K	H	G	T	N	W	K	E	F	V	Y	X	V	E	N	G	X	P	A	X	K	A	I	Q	S	A	T	X	E	T	A	K	L	L	R	I	E	D	K	L	G	S	I	E	S	G	K	L	A	D	L	I	A	V	K	G	N	P	I	E	D	I	S	V
Template Known Secondary structure				T			B						B	T	T	B		T	T		T	T									T	T										T	T							T	T		T	T	T	S	S	S			T	T	S	B							S	S		T	T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

		365	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	I	H	I	D	H	V	W	R	Q	G	K	R	V	F
Query Conservation	.
Alig confidence	.												.
Template Conservation													.
Template Sequence	L	E	N	V	D	V	V	I	K	D	G	L	.	L	Y
Template Known Secondary structure	G	G	G							T	T		.
Template Predicted Secondary structure													.
Template SS confidence
	397	.	.	400	.	.	.	.	.	.	.	.		.	410

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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