Job Description P16689 Confidence 100.00% Date Thu Jan 5 11:35:39 GMT 2012 Rank 43 Aligned Residues 335 % Identity 17% Template c2p9bA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:possible prolidase; PDBTitle: crystal structure of putative prolidase from2 bifidobacterium longum Resolution 1.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure															.	.	.	.									.											.	.	.	.
Query SS confidence															.	.	.	.									.											.	.	.	.
Query Sequence		M	I	I	N	N	V	K	L	V	L	E	N	E	.	.	.	.	V	V	S	G	S	L	E	V	.	Q	N	G	E	I	R	A	F	A	E	.	.	.	.	S	Q	S	R	L	P	E	A	M	D	G	E	G	G	W	L	L	P	G	L	I	E	L	H	T	D	N	L	D	K	F	F	T	P	R	P	K	V	D	W
Query Conservation															.	.	.	.									.											.	.	.	.
Alig confidence															.	.	.	.									.											.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	L	A	H	A	T	I	V	T	G	D	K	A	G	T	I	L	R	N	X	T	I	V	V	G	A	D	G	R	I	E	Q	V	A	P	S	I	E	T	S	I	P	A	E	Y	H	Y	L	D	G	T	G	K	I	V	X	P	G	L	I	N	A	H	T	H	L	F	S	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T	T													T	T	S	B							G	G	G					T	T							T	T														S			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		P	A	H	S	A	M	S	S	H	D	A	L	M	V	A	S	G	I	T	T	V	L	D	A	V	A	I	G	D	V	R	D	G	G	D	R	L	E	N	L	E	K	M	I	N	A	I	E	E	T	Q	K	R	G	V	N	R	A	E	H	R	L	H	L	R	C	E	L	P	H	H	.	.	.	T	T	L	P	L	F
Query Conservation																																																																									.	.	.
Alig confidence																																																																									.	.	.
Template Conservation
Template Sequence		Y	X	A	A	T	V	K	H	N	A	T	T	L	L	E	S	G	V	T	T	I	R	T	L	G	D	V	G	Y	E	V	V	T	L	R	D	Q	I	D	A	G	Q	I	L	G	P	R	I	L	A	S	G	P	L	X	A	I	P	E	G	H	G	A	P	L	I	A	L	T	S	G	T	P	E	E	A	R	T	A	V
Template Known Secondary structure																	T	T							S			S	S	S											T	T	S	S										S							S	S									S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	L	V	Q	R	E	P	V	T	L	V	S	L	M	D	H	S	P	G	Q	R	Q	F	A	N	R	E	K	Y	R	E	Y	Y	Q	G	K	Y	S	L	T	D	A	Q	M	Q	Q	Y	E	E	E	Q	L	A	L	A	A	R	W	S	Q	P	N	R	E	S	I	A	A	L	C	R	A	R	K	I	A	L	A	S
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	N	L	K	A	G	V	N	A	I	K	I	A	A	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	T	D	A	Q	E	I	Q	X	S	V	E	Q	X	R	A	I	C	D	E	A	H	Q	Y	G	V	I	V	G	A
Template Known Secondary structure							T	T		S							S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S																					T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																																	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.																												.	.	280	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	D	D	A	T	H	A	H	V	A	E	S	H	Q	L	G	S	V	I	A	E	F	P	T	T	F	E	A	A	E	A	S	R	K	H	G	M	N	V	L	M	G	A	P	N	I	V	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	H	S
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	A	Q	S	P	E	G	V	R	R	S	L	L	A	G	V	D	T	I	E	H	G	S	V	L	D	D	E	L	I	G	X	F	R	H	N	P	N	A	L	R	G	Y	S	A	L	I	P	T	L	S	A	G	L	P	L	T	L	L	G	Q	D	V	T	G	I	T	D	I	Q	L	E	N	S	K	N	V	V	G	G
Template Known Secondary structure					S											T		S																				T	T	S	T	T	S																	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.																			.																									.
Query SS confidence																							.	.																			.																									.
Query Sequence		G	N	V	A	A	S	E	L	A	Q	L	G	L	L	D	I	L	S	S	D	Y	.	.	Y	P	A	S	L	L	D	A	A	F	R	V	A	D	D	Q	S	N	.	R	F	T	L	P	Q	A	V	K	L	V	T	K	N	P	A	Q	A	L	N	L	Q	D	R	.	G	V	I	G	E	G	K	R	A	D	L	V	L
Query Conservation																							.	.																			.																									.
Alig confidence																							.	.																			.																									.
Template Conservation
Template Sequence		X	V	S	G	A	R	Q	A	H	E	A	G	L	X	I	G	V	G	T	D	T	G	X	T	F	V	P	Q	Y	A	T	W	R	E	L	E	L	L	V	A	Y	A	G	F	S	P	A	E	A	L	H	A	A	T	A	V	N	A	S	I	L	G	V	D	A	E	T	G	S	L	E	V	G	K	S	A	D	L	L	V
Template Known Secondary structure												T	T			B						T	T	S	T	T	S		T	T																									T							T	T		T	T	T	S	S	S			T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		358	.	360	.	.	.						.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.
Query SS confidence								.	.	.	.	.
Query Sequence		A	H	R	K	D	N	.	.	.	.	.	H	I	H	I	D	H	V	W	R	Q	G	K	R	V	F
Query Conservation								.	.	.	.	.
Alig confidence								.	.	.	.	.
Template Conservation
Template Sequence		L	N	A	N	P	L	D	D	L	R	A	L	E	H	P	A	L	V	I	A	A	G	H	P	V	W
Template Known Secondary structure			S	S		T	T	T		G	G	G	G	T	S		S					T	T
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions