Job Description P16689 Confidence 100.00% Date Thu Jan 5 11:35:39 GMT 2012 Rank 3 Aligned Residues 360 % Identity 17% Template c1gkpD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:hydantoinase; PDBTitle: d-hydantoinase (dihydropyrimidinase) from thermus sp. in2 space group c2221 Resolution 1.29 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		M	I	I	N	N	V	K	L	V	L	E	N	E	V	V	S	G	S	L	E	V	Q	N	G	E	I	R	A	F	A	E	.	.	S	Q	S	R	L	P	E	A	M	D	G	E	G	G	W	L	L	P	G	L	I	E	L	H	T	D	N	L	D	K	F	F	T	P	R	P	K	V	D	W	P	A	H	S	A	M	S
Query Conservation																																	.	.
Alig confidence																																	.	.																																									.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.
Template Sequence		L	L	I	K	N	G	E	I	I	T	A	D	S	R	Y	K	A	D	I	Y	A	E	G	E	T	I	T	R	I	G	Q	N	L	E	A	P	P	G	T	E	V	I	D	A	T	G	K	Y	V	F	P	G	F	I	D	P	H	V	H	I	Y	L	P	F	M	A	T	F	A	K	D	T	H	.	.	.	.	.	.	E
Template Known Secondary structure												T	T										S	S	S	B						S	S					T	T							T	T	S													S	S				T	T				S				.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.							.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	D	A	L	M	V	A	S	G	I	T	T	V	L	D	A	V	A	I	G	D	V	R	D	G	G	D	R	L	E	N	L	E	K	M	I	N	A	I	E	E	T	Q	K	R	G	V	N	R	A	E	H	R	L	H	L	R	C	E	L	P	H	H	T	T	L	P	L	F	E	K	L	V	Q	R	E	P	V	T
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.
Template Sequence		T	G	S	K	A	A	L	M	G	G	T	T	T	Y	I	E	M	C	C	P	S	R	N	D	D	A	L	E	G	Y	Q	L	W	K	S	K	A	E	G	N	S	Y	C	D	Y	T	F	H	M	A	V	S	.	.	.	.	.	.	.	.	K	F	D	E	K	T	E	G	Q	L	R	E	I	V	A	D	G	I	S	S
Template Known Secondary structure										T	T												T	T	S														T	T	T		S	S										.	.	.	.	.	.	.	.			S													T	T			B
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.									.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.											.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.									.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Query Sequence		L	V	S	L	M	D	H	S	P	G	Q	R	Q	F	A	N	R	E	K	Y	R	E	Y	Y	Q	G	K	Y	.	.	.	.	.	.	.	.	.	.	S	L	T	D	A	Q	M	Q	Q	Y	E	E	E	Q	L	A	L	A	A	R	W	S	.	.	.	.	.	.	.	.	Q	P	N	R	E	S	I	A	A	L	C	R
Query Conservation																														.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	I	F	L	S	Y	K	N	F	F	G	V	D	D	G	E	M	Y	Q	T	L	R	L	A	K	E	L	G	V	I	V	T	A	H	C	E	N	A	E	L	V	G	R	L	Q	Q	K	L	L	S	E	G	K	T	G	P	E	W	H	E	P	S	R	P	E	A	V	E	A	E	G	T	A	R	F	A	T	F	L	E
Template Known Secondary structure						S	S	T	T	T	T	B																	T		B						S															T	T			S	G	G	G	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.										.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.
Query Sequence		A	R	K	I	A	L	A	S	H	D	D	A	T	H	A	H	V	A	E	S	H	Q	L	G	.	.	.	.	.	.	.	.	.	S	V	I	A	E	F	P	T	T	F	E	A	A	E	A	S	R	K	H	G	M	N	V	L	M	G	A	P	N	I	V	R	G	G	S	H	S	G	N	V	A	A	S	E	L	A	Q
Query Conservation																										.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		T	T	G	A	T	G	Y	V	V	H	L	S	C	K	P	A	L	D	A	A	M	A	A	K	A	R	G	V	P	I	Y	I	E	S	V	I	P	H	F	L	L	D	K	T	Y	A	E	R	G	G	V	E	A	M	K	Y	I	M	S	P	P	L	.	.	.	.	R	D	K	R	N	Q	K	V	L	W	D	A	L	A
Template Known Secondary structure				T							S			S													T	T																G	G	G	G	G	S							T	T			S	S			.	.	.	.			T
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.					.	.	.	.	.	.	.	.	300	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.																						.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																								.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																								.
Query Sequence		L	G	L	L	D	I	L	S	S	D	Y	Y	P	A	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	A	A	F	R	V	A	D	D	Q	S	N	R	.	F	T	L	P	Q	A	V	K	L	V	T	K	N	P	A	Q	A	L	N	L	Q	D	R	.	G	V	I	G
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																								.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																								.
Template Conservation
Template Sequence		Q	G	F	I	D	T	V	G	T	D	H	C	P	F	D	T	E	Q	K	L	L	G	K	E	A	F	T	A	I	P	N	G	I	P	A	I	E	D	R	V	N	L	L	Y	T	Y	G	V	S	R	G	R	L	D	I	H	R	F	V	D	A	A	S	T	K	A	A	K	L	F	G	L	F	P	R	K	G	T	I	A
Template Known Secondary structure		T	T	S	S							B									G	G	G	S	S		G	G	G	S				B			T	T	T									T	T	T	S	S	S											T							T	T		T	T	T	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.																							.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	G	K	R	A	D	L	V	L	A	H	R	K	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	I	H	I	D	H	V	W	R	Q	G	K	R	V	F
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	S	D	A	D	L	V	V	Y	D	P	Q	Y	R	G	T	I	S	V	K	T	Q	H	V	N	N	D	Y	N	G	F	E	G	F	E	I	D	G	R	P	S	V	V	T	V	R	G	K	V	A	V
Template Known Secondary structure		T	T	S	B								T	T							G	G	G			S	S	S	S			T	T	T	T				S									T	T
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.