Job Description P16689 Confidence 100.00% Date Thu Jan 5 11:35:39 GMT 2012 Rank 42 Aligned Residues 338 % Identity 17% Template c1e9yB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:urease subunit beta; PDBTitle: crystal structure of helicobacter pylori urease in complex with2 acetohydroxamic acid Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.															.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	I	N	N	V	K	L	V	L	E	N	E	V	V	S	G	S	L	E	V	Q	N	G	E	I	R	A	F	A	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	R	L	P	E	A	M	D	G	E	G	G	W	L	L	P	G	L	I	E	L	H	T	D	N	L	D	K	F	F	T	P	R
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		L	I	I	T	N	A	L	I	V	D	Y	T	G	I	Y	K	A	D	I	G	I	K	D	G	K	I	A	G	I	G	K	G	G	N	K	D	M	Q	D	G	V	K	N	N	L	S	V	G	P	A	T	E	A	L	A	G	E	G	L	I	V	T	A	G	G	I	D	T	H	I	H	F	I	S	P	Q	.	.	.	.
Template Known Secondary structure												T	T											T	T									B		T	T	T	S	S	S			G	G	G	B			T	T							T	T														T	T		T	T	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		P	K	V	D	W	P	A	H	S	A	M	S	S	H	D	A	L	M	V	A	S	G	I	T	T	V	L	D	A	V	A	I	G	D	V	R	D	G	G	D	.	.	.	.	R	L	E	N	L	E	K	M	I	N	A	I	E	E	T	Q	K	R	G	V	N	R	A	E	H	R	L	H	L	R	C	E	L	P	H	H
Query Conservation																																										.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	P	T	A	F	A	S	G	V	T	T	M	I	G	G	G	T	G	P	A	D	G	T	N	A	T	T	I	T	P	G	R	R	N	L	K	W	M	L	R	A	A	E	E	Y	S	M	N	L	G	F	L	A	K	.	.	.	.	.	.	.	.	.	G	N	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.								T	T										S	S																								T	T	S	S	S					B			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.
Template SS confidence
															144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.										.	200	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.										.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.
Query Sequence		T	T	L	P	L	F	E	K	L	V	Q	R	E	P	V	T	L	V	S	L	M	D	H	S	P	G	Q	R	Q	F	A	N	R	E	K	Y	R	E	Y	Y	Q	G	.	.	.	.	.	.	.	.	.	K	Y	S	L	T	D	A	Q	M	Q	Q	Y	E	E	E	Q	L	A	L	A	A	R	W	S	Q	P	N	R	E
Query Conservation																																												.	.	.	.	.	.	.	.	.
Alig confidence																			.																									.	.	.	.	.	.	.	.	.
Template Conservation																			.
Template Sequence		S	N	D	A	S	L	A	D	Q	I	E	A	G	A	I	G	F	.	I	H	E	D	W	G	T	T	P	S	A	I	N	H	A	L	D	V	A	D	K	Y	D	V	Q	V	A	I	H	T	D	T	L	N	E	A	G	C	V	E	D	T	M	A	A	I	A	G	R	T	M	H	T	F	H	T	E	G	A	G	G	G
Template Known Secondary structure		S											T	T		S	B		.			G	G	G																	T	T		B							T	T		S	S											T	T						T	T	T	T	S	T	T	S
Template Predicted Secondary structure																			.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230							.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		S	I	A	A	L	C	R	A	R	K	I	A	L	A	S	H	D	.	.	.	.	.	.	D	A	T	H	A	H	V	A	E	S	H	Q	L	G	S	V	I	A	E	F	P	T	T	F	E	A	A	E	A	S	R	K	H	G	M	N	V	L	M	G	A	P	N	I	V	R	G	G	S	H	S	G	N	V	A	A	S
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	A	P	D	I	I	K	V	A	G	E	H	N	I	L	P	A	S	T	N	P	T	I	P	F	T	V	N	T	E	A	E	H	M	D	M	L	M	V	C	H	H	K	D	K	S	I	K	E	D	V	Q	F	A	D	S	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	Q	T	I	A	A	E	D
Template Known Secondary structure		S	T	T	T	G	G	G	G	G	G	S	T	T							G	G	G		S		B	T	T												T	T	T			S	S													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.														340	.	.	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.																		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		E	L	A	Q	L	G	L	L	D	I	L	S	S	D	Y	Y	P	A	S	L	L	D	A	A	F	R	V	A	D	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	R	F	T	L	P	Q	A	V	K	L	V	T	K	N	P	A	Q	A	L	N	L	Q	D	R	.	G	V	I	G	E
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		T	L	H	D	M	G	A	F	S	I	T	S	S	D	S	Q	A	M	G	R	V	G	E	V	I	T	R	T	W	Q	T	A	D	K	N	K	K	E	F	G	R	L	K	E	E	K	G	D	N	D	N	F	R	I	K	R	Y	L	S	K	Y	T	I	N	P	A	I	A	H	G	I	S	E	Y	V	G	S	V	E	V
Template Known Secondary structure						T	T	S								T	T	S	S			T	T	S																		S		S	S			S	S	S										G	G	G	T							T	T		T	T	T	S	S	S	S		T
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	R	A	D	L	V	L	A	H	R	K	D	N	H	I	H	I	D	H	V	W	R	Q	G	K	R	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	V	A	D	L	V	L	W	S	P	A	F	F	G	V	K	P	N	M	I	I	K	G	G	F	I	A	L
Template Known Secondary structure		T	S	B								T	T	T	T	T	T			S					T	T
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions