Job Description P24193 Confidence 100.00% Date Thu Jan 5 11:41:07 GMT 2012 Rank 3 Aligned Residues 291 % Identity 40% Template c2z1eA_ PDB info PDB header:transferase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form) Resolution 1.55 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	Q	E	D	Q	A	R	L	D	L	A	Q	L	V	A	E	G	D	R	L	A	F	S	T	D	S	Y	V	I	D	P	L	F	F	P	G	G	N	I	G	K	L	A	I	C	G	T	A	N	D	V	A	V	S	G	A	I	P	R	Y	L	S	C	G	F	I	L	E	E	G	L	P	M	E	T	L	K	A	V
Query Conservation
Alig confidence											.	.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence		G	E	L	D	D	G	A	T	I	.	.	.	.	.	P	F	G	D	K	H	I	V	F	T	I	D	G	H	T	V	K	P	L	F	F	P	G	G	D	I	G	R	L	A	V	S	G	T	V	N	D	L	A	V	M	G	A	E	P	I	A	L	A	N	S	M	I	I	G	E	G	L	D	M	E	V	L	K	R	V
Template Known Secondary structure						S					.	.	.	.	.			T	T													S	S	S			T	T																	T	T	T														T	T
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.						.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	S	M	A	E	T	A	R	A	A	G	I	A	I	V	T	G	D	T	K	V	V	Q	R	G	A	V	D	K	L	F	I	N	T	A	G	M	G	A	I	P	A	N	I	H	W	G	A	Q	T	L	T	A	G	D	V	L	L	V	S	G	T	L	G	D	H	G	A	T	I	L	N	L	R	E	Q	L	G	L
Query Conservation
Alig confidence																													.	.	.	.
Template Conservation																													.	.	.	.
Template Sequence		L	K	S	M	D	E	T	A	R	E	V	P	V	P	I	V	T	G	D	T	K	V	V	E	D	K	I	.	.	.	.	E	M	F	V	I	T	A	G	I	G	I	A	E	H	P	V	S	D	A	G	A	K	V	G	D	A	V	L	V	S	G	T	I	G	D	H	G	I	A	L	M	S	H	R	E	G	I	A	F
Template Known Secondary structure												T	T												S	S	S		.	.	.	.													S	S				T	T				T	T						S	S		S	S											T	T
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140					.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		D	G	E	L	V	S	D	C	A	V	.	.	.	L	T	P	L	I	Q	T	L	R	D	I	P	G	V	K	A	L	R	D	A	T	R	G	G	V	N	A	V	V	H	E	F	A	A	A	C	G	C	G	I	E	L	S	E	A	A	L	P	V	K	P	A	V	R	G	V	C	E	L	L	G	L	D	A	L	N	F
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		E	T	E	L	K	S	D	V	A	P	I	W	D	V	V	K	A	V	A	E	T	I	G	W	E	N	I	H	A	M	K	D	P	T	R	A	G	L	S	N	A	L	N	E	I	A	R	K	S	N	V	G	I	L	V	R	E	A	D	I	P	I	R	P	E	V	R	A	A	S	E	M	L	G	I	S	P	Y	D	V
Template Known Secondary structure		S	S																						G	G	G									T	T														T							G	G	G	S														T			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		A	N	E	G	K	L	V	I	A	V	E	R	N	A	A	E	Q	V	L	A	A	L	H	S	H	P	L	G	K	D	A	A	L	I	G	E	V	V	E	R	K	G	.	.	V	R	L	A	G	L	Y	G	V	K	R	T	L	D	L	P	H	A	E	P	L
Query Conservation																																												.	.
Alig confidence																																												.	.
Template Conservation
Template Sequence		A	N	E	G	K	V	V	M	V	V	A	R	E	Y	A	E	E	A	L	E	A	M	R	K	T	E	K	G	R	N	A	A	I	I	G	E	V	I	A	D	Y	R	G	K	V	L	L	E	T	G	I	G	G	K	R	F	M	E	P	P	E	G	D	P	V
Template Known Secondary structure				S	S								G	G	G										T	S	S	T	T	T	T									S	S	S	T	T							T	T	S								S	S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions